Evan E. Eichler

According to our database, Evan E. Eichler authored at least 23 papers between 2002 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

SVbyEye: a visual tool to characterize structural variation among whole-genome assemblies.

David Porubsky, Xavi Guitart, Dongahn Yoo, Philip C. Dishuck, William T. Harvey, Evan E. Eichler

Bioinform., 2025

2024

Identification and annotation of centromeric hypomethylated regions with CDR-Finder.

Francesco Kumara Mastrorosa, Keisuke Oshima, Allison N. Rozanski, William T. Harvey, Evan E. Eichler, Glennis Logsdon

Bioinform., 2024

2023

GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads.

Philip C. Dishuck, Allison N. Rozanski, Glennis Logsdon, David Porubsky, Evan E. Eichler

Bioinform., January, 2023

2022

StainedGlass: interactive visualization of massive tandem repeat structures with identity heatmaps.

Mitchell R. Vollger, Peter Kerpedjiev, Adam M. Phillippy, Evan E. Eichler

Bioinform., 2022

2018

Strand-seq enables reliable separation of long reads by chromosome via expectation maximization.

Maryam Ghareghani, David Porubsky, Ashley D. Sanders, Sascha Meiers, Evan E. Eichler, Jan O. Korbel, Tobias Marschall

Bioinform., 2018

2017

denovo-db: a compendium of human de novo variants.

Tychele Turner, Qian Yi, Niklas Krumm, John Huddleston, Kendra Hoekzema, Holly A. Stessman, Anna-Lisa Doebley, Raphael A. Bernier, Deborah A. Nickerson, Evan E. Eichler

Nucleic Acids Res., 2017

Resolving Multicopy Duplications de novo Using Polyploid Phasing.

Mark J. P. Chaisson, Sudipto Mukherjee, Sreeram Kannan, Evan E. Eichler

Proceedings of the Research in Computational Molecular Biology, 2017

2014

The contribution of <i>de novo</i> coding mutations to autism spectrum disorder.

Ivan Iossifov, Brian J. O'Roak, Stephan J. Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A. Stessman, Kali T. Witherspoon, Laura Vives, Karynne E. Patterson, Joshua D. Smith, Bryan Paeper, Deborah A. Nickerson, Jeanselle Dea, Shan Dong, Luis E. Gonzalez, Jeffrey D. Mandell, Shrikant M. Mane, Michael T. Murtha, Catherine A. Sullivan, Michael F. Walker, Zainulabedin Waqar, Liping Wei, A. Jeremy Willsey, Boris Yamrom, Yoon-ha Lee, Ewa Grabowska, Ertugrul Dalkic, Zi-Hua Wang, Steven Marks, Peter Andrews, Anthony Leotta, Jude Kendall, Inessa Hakker, Julie Rosenbaum, Beicong Ma, Linda Rodgers, Jennifer Troge, Giuseppe Narzisi, Seungtai Yoon, Michael C. Schatz, Kenny Ye, W. Richard McCombie, Jay Shendure, Evan E. Eichler, Matthew W. State, Michael Wigler

Nat., 2014

mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications.

Faraz Hach, Iman Sarrafi, Farhad Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp

Nucleic Acids Res., 2014

ORMAN: Optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.

Phuong Dao, Ibrahim Numanagic, Yen-Yi Lin, Faraz Hach, Emre Karakoç, Nilgun Donmez, Colin C. Collins, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2014

2011

Sensitive and fast mapping of di-base encoded reads.

Farhad Hormozdiari, Faraz Hach, Süleyman Cenk Sahinalp, Evan E. Eichler, Can Alkan

Bioinform., 2011

Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes.

Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2011

2010

Targeted interrogation of copy number variation using SCIMMkit.

Troy Zerr, Gregory M. Cooper, Evan E. Eichler, Deborah A. Nickerson

Bioinform., 2010

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.

Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2010

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.

Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, Inanç Birol, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2010

Session Introduction.

Can Alkan, Michael Brudno, Evan E. Eichler, Maricel G. Kann, Süleyman Cenk Sahinalp

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

2009

Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes.

Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2009

2007

Organization and Evolution of Primate Centromeric DNA from Whole-Genome Shotgun Sequence Data.

Can Alkan, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, Süleyman Cenk Sahinalp, Evan E. Eichler

PLoS Comput. Biol., 2007

2005

Manipulating multiple sequence alignments via MaM and WebMaM.

Can Alkan, Eray Tüzün, Jerome Buard, Franck Lethiec, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp

Nucleic Acids Res., 2005

2004

The Role of Unequal Crossover in Alpha-Satellite DNA Evolution: A Computational Analysis.

Can Alkan, Evan E. Eichler, Jeffrey A. Bailey, Süleyman Cenk Sahinalp, Eray Tüzün

J. Comput. Biol., 2004

Identifying Uniformly Mutated Segments within Repeats.

Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün

J. Bioinform. Comput. Biol., 2004

2002

Recent duplication, evolution and assembly of the human genome.

Evan E. Eichler

Proceedings of the Sixth Annual International Conference on Computational Biology, 2002

Statistical Identification of Uniformly Mutated Segments within Repeats.

Süleyman Cenk Sahinalp, Evan E. Eichler, Paul W. Goldberg, Petra Berenbrink, Tom Friedetzky, Funda Ergün

Proceedings of the Combinatorial Pattern Matching, 13th Annual Symposium, 2002