Fereydoun Hormozdiari

According to our database, Fereydoun Hormozdiari authored at least 23 papers between 2006 and 2020.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of two.

2020

Meltos: multi-sample tumor phylogeny reconstruction for structural variants.

Camir Ricketts, Daniel Seidman, Victoria Popic, Fereydoun Hormozdiari, Serafim Batzoglou, Iman Hajirasouliha

Bioinform., 2020

2019

Discovery of tandem and interspersed segmental duplications using high-throughput sequencing.

Arda Soylev, Thong Minh Le, Hajar Amini, Can Alkan, Fereydoun Hormozdiari

Bioinform., 2019

2018

Contribution of Structural Variation to Genome Structure: TAD Fusion Discovery and Ranking.

Linh Huynh, Fereydoun Hormozdiari

Proceedings of the Research in Computational Molecular Biology, 2018

2017

Ultra-Accurate Complex Disorder Prediction: Case Study of Neurodevelopmental Disorders.

Linh Huynh, Fereydoun Hormozdiari

Proceedings of the Research in Computational Molecular Biology, 2017

2016

The Second Decade of the International Conference on Research in Computational Molecular Biology (RECOMB).

Farhad Hormozdiari, Fereydoun Hormozdiari, Carl Kingsford, Paul Medvedev, Fabio Vandin

Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

2011

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.

Andrew W. McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah

PLoS Comput. Biol., 2011

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.

Andrew W. McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp

Bioinform., 2011

Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes.

Fereydoun Hormozdiari, Iman Hajirasouliha, Andrew W. McPherson, Evan E. Eichler, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2011

Session Introduction.

Can Alkan, Emidio Capriotti, Eleazar Eskin, Fereydoun Hormozdiari, Maricel G. Kann

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010

Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length.

Alexander Schönhuth, Raheleh Salari, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp

J. Comput. Biol., 2010

Protein-Protein Interaction Network Evaluation for Identifying Potential Drug Targets.

Fereydoun Hormozdiari, Raheleh Salari, Vineet Bafna, Süleyman Cenk Sahinalp

J. Comput. Biol., 2010

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.

Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yörükoglu, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2010

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.

Iman Hajirasouliha, Fereydoun Hormozdiari, Can Alkan, Jeffrey M. Kidd, Inanç Birol, Evan E. Eichler, Süleyman Cenk Sahinalp

Bioinform., 2010

2009

The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study.

Fereydoun Hormozdiari, Raheleh Salari, Michael Hsing, Alexander Schönhuth, Simon K. Chan, Süleyman Cenk Sahinalp, Artem Cherkasov

J. Comput. Biol., 2009

Quantifying Systemic Evolutionary Changes by Color Coding Confidence-Scored PPI Networks.

Phuong Dao, Alexander Schönhuth, Fereydoun Hormozdiari, Iman Hajirasouliha, Süleyman Cenk Sahinalp, Martin Ester

Proceedings of the Algorithms in Bioinformatics, 9th International Workshop, 2009

Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomes.

Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2009

Dense Graphlet Statistics of Protein Interaction and Random Networks.

Recep Colak, Fereydoun Hormozdiari, Flavia Moser, Alexander Schönhuth, J. Holman, Martin Ester, Süleyman Cenk Sahinalp

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

The Relation between Indel Length and Functional Divergence: A Formal Study.

Raheleh Salari, Alexander Schönhuth, Fereydoun Hormozdiari, Artem Cherkasov, Süleyman Cenk Sahinalp

Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies.

Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp, Inanç Birol

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Biomolecular network motif counting and discovery by color coding.

Noga Alon, Phuong Dao, Iman Hajirasouliha, Fereydoun Hormozdiari, Süleyman Cenk Sahinalp

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Not All Scale-Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Evolution.

Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp

PLoS Comput. Biol., 2007

Relationship between insertion/deletion (indel) frequency of proteins and essentiality.

Simon K. Chan, Michael Hsing, Fereydoun Hormozdiari, Artem Cherkasov

BMC Bioinform., 2007

2006

Not All Scale Free Networks Are Born Equal: The Role of the Seed Graph in PPI Network Emulation.

Fereydoun Hormozdiari, Petra Berenbrink, Natasa Przulj, Süleyman Cenk Sahinalp

Proceedings of the Systems Biology and Computational Proteomics, 2006