Takashi Gojobori

According to our database1, Takashi Gojobori authored at least 61 papers between 1994 and 2022.

Collaborative distances:



In proceedings 
PhD thesis 


On csauthors.net:


DeepSVP: integration of genotype and phenotype for structural variant prioritization using deep learning.
Bioinform., 2022

DTi2Vec: Drug-target interaction prediction using network embedding and ensemble learning.
J. Cheminformatics, 2021

Integration of Droplet Microfluidic Tools for Single-Cell Functional Metagenomics: An Engineering Head Start.
Genom. Proteom. Bioinform., 2021

Biomedical computing in the Arab world: unlocking the potential of a growing research community.
Commun. ACM, 2021

IBDDB: a manually curated and text-mining-enhanced database of genes involved in inflammatory bowel disease.
Database J. Biol. Databases Curation, 2021

DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques.
J. Cheminformatics, 2020

SenWave: Monitoring the Global Sentiments under the COVID-19 Pandemic.
CoRR, 2020

In Memory of Vladimir B. Bajic (1952-2019).
Genom. Proteom. Bioinform., 2019

Functional interrogation of Plasmodium genus metabolism identifies species- and stage-specific differences in nutrient essentiality and drug targeting.
PLoS Comput. Biol., 2018

Maser: one-stop platform for NGS big data from analysis to visualization.
Database J. Biol. Databases Curation, 2018

DESM: portal for microbial knowledge exploration systems.
Nucleic Acids Res., 2016

Marine Metagenome as A Resource for Novel Enzymes.
Genom. Proteom. Bioinform., 2015

H-InvDB in 2013: an omics study platform for human functional gene and transcript discovery.
Nucleic Acids Res., 2013

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.
Nucleic Acids Res., 2012

DDBJ progress report.
Nucleic Acids Res., 2011

Towards BioDBcore: a community-defined information specification for biological databases.
Database J. Biol. Databases Curation, 2011

H-InvDB in 2009: extended database and data mining resources for human genes and transcripts.
Nucleic Acids Res., 2010

H-DBAS: human-transcriptome database for alternative splicing: update 2010.
Nucleic Acids Res., 2010

DDBJ launches a new archive database with analytical tools for next-generation sequence data.
Nucleic Acids Res., 2010

CIG-DB: the database for human or mouse immunoglobulin and T cell receptor genes available for cancer studies.
BMC Bioinform., 2010

DDBJ dealing with mass data produced by the second generation sequencer.
Nucleic Acids Res., 2009

VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts.
Nucleic Acids Res., 2009

The GTOP database in 2009: updated content and novel features to expand and deepen insights into protein structures and functions.
Nucleic Acids Res., 2009

Optimized ancestral state reconstruction using Sankoff parsimony.
BMC Bioinform., 2009

G-compass: a web-based comparative genome browser between human and other vertebrate genomes.
Bioinform., 2009

DDBJ with new system and face.
Nucleic Acids Res., 2008

Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees.
Nucleic Acids Res., 2008

Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

H-DBAS: Alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational.
Nucleic Acids Res., 2007

DDBJ working on evaluation and classification of bacterial genes in INSDC.
Nucleic Acids Res., 2007

TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB.
Nucleic Acids Res., 2006

DDBJ in preparation for overview of research activities behind data submissions.
Nucleic Acids Res., 2006

The Rice Annotation Project Database (RAP-DB): hub for <i>Oryza sativa</i> ssp. <i>japonica</i> genome information.
Nucleic Acids Res., 2006

DDBJ in collaboration with mass-sequencing teams on annotation.
Nucleic Acids Res., 2005

The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.
Nucleic Acids Res., 2005

A C++ computational environment for biomolecular sequence management.
Comput. Manag. Sci., 2005

DBJ in the stream of various biological data.
Nucleic Acids Res., 2004

DNA Data Bank of Japan (DDBJ) in XML.
Nucleic Acids Res., 2003

DNA Data Bank of Japan (DDBJ) for genome scale research in life science.
Nucleic Acids Res., 2002

ADAPTSITE: detecting natural selection at single amino acid sites.
Bioinform., 2001

DNA Data Bank of Japan (DDBJ) in collaboration with mass sequencing teams.
Nucleic Acids Res., 2000

Codon usage tabulated from international DNA sequence databases: status for the year 2000.
Nucleic Acids Res., 2000

Evolutionary features of genomes as disclosed by comparative analysis of complete genome sequences (abstract only).
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

DNA Data Bank of Japan dealing with large-scale data submission.
Nucleic Acids Res., 1999

Codon usage tabulated from the international DNA sequence databases; its status 1999.
Nucleic Acids Res., 1999

Topology Selection in Unrooted Molecular Phylogenetic Tree By Minimum Model-Based Complexity Method.
Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

DNA Data Bank of Japan at work on genome sequence data.
Nucleic Acids Res., 1998

The non-redundant Bacillus subtilis (NRSub) database: update 1998.
Nucleic Acids Res., 1998

Codon usage tabulated from the international DNA sequence databases.
Nucleic Acids Res., 1998

Formal design and implementation of an improved DDBJ DNA database with a new schema and object-oriented library.
Bioinform., 1998

The Application of Model-based Complexity Inference Method to Molecular Evolution Analysis.
Proceedings of the MEDINFO '98, 1998

DNA Data Bank of Japan in the age of information biology.
Nucleic Acids Res., 1997

The NRSub database: update 1997.
Nucleic Acids Res., 1997

Inference of Molecular Phylogenetic Tree Based on Minimum Model-Based Complexity Method.
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Molecular Phylogenetic Trees are Inferred by Using Minimum Model-Based Complexity.
Proceedings of the Biocomputing and emergent computation: Proceedings of BCEC97, 1997

NRSub: a non-redundant database for Bacillus subtilis.
Nucleic Acids Res., 1996

Condon usage tabulated from the international DNA sequence databases.
Nucleic Acids Res., 1996

A Biological Taxonomy Database System an World-Wide Web.
Proceedings of the German Conference on Bioinformatics, 1996

Molecular evolutionary phylogenetic trees based on minimum description length principle.
Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995

YAMATO and ASUKA: DNA database management system.
Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995

Toward Unification of Taxonomy Databases in a Distributed Environment.
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994