Joel S. Bader

According to our database1, Joel S. Bader authored at least 22 papers between 2003 and 2020.

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Bibliography

2020
Between-tumor and within-tumor heterogeneity in invasive potential.
PLoS Comput. Biol., 2020

OrgDyn: feature- and model-based characterization of spatial and temporal organoid dynamics.
Bioinform., 2020

2016
BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts.
Bioinform., 2016

BioPartsDB: a synthetic biology workflow web-application for education and research.
Bioinform., 2016

2013
Session Introduction.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012
How networks change with time.
Bioinform., 2012

Query-based Biclustering using Formal Concept Analysis.
Proceedings of the Twelfth SIAM International Conference on Data Mining, 2012

Session Introduction.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011
Resolving the structure of interactomes with hierarchical agglomerative clustering.
BMC Bioinform., 2011

2010
Predicting functional associations from metabolism using bi-partite network algorithms.
BMC Syst. Biol., 2010

NeMo: Network Module identification in Cytoscape.
BMC Bioinform., 2010

2009
Metabolic Flux Correlations, Genetic Interactions, and Disease.
J. Comput. Biol., 2009

Analytical approximations for the amplitude and period of a relaxation oscillator.
BMC Syst. Biol., 2009

Precision and recall estimates for two-hybrid screens.
Bioinform., 2009

Automated Design of Assemblable, Modular, Synthetic Chromosomes.
Proceedings of the Parallel Processing and Applied Mathematics, 2009

2007
Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps.
PLoS Comput. Biol., 2007

Ab initio Prediction of Transcription Factor Binding Sites.
Proceedings of the Biocomputing 2007, 2007

2006
Probabilistic Paths for Protein Complex Inference.
Proceedings of the Systems Biology and Computational Proteomics, 2006

2005
Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast.
BMC Bioinform., 2005

Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthetic lethality.
BMC Bioinform., 2005

2004
Probabilistic inference of molecular networks from noisy data sources.
Bioinform., 2004

2003
Greedily building protein networks with confidence.
Bioinform., 2003


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