Virginie Uhlmann

According to our database, Virginie Uhlmann authored at least 33 papers between 2014 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

Are Vision Foundation Models Foundational for Electron Microscopy Image Segmentation?

Caterina Fuster-Barceló, Virginie Uhlmann

CoRR, February, 2026

2025

ShapeEmbed: a self-supervised learning framework for 2D contour quantification.

Anna Foix Romero, Craig Russell, Alexander Krull, Virginie Uhlmann

CoRR, July, 2025

A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens.

Weheliye H. Weheliye, Javier Rodriguez, Luigi Feriani, Avelino Javer, Virginie Uhlmann, André E. X. Brown

PLoS Comput. Biol., 2025

bia-binder: a web-native cloud compute service for the bioimage analysis community.

Craig Russell, Jean-Marie Burel, Awais Athar, Simon Li, Ugis Sarkans, Jason R. Swedlow, Alvis Brazma, Matthew Hartley, Virginie Uhlmann

Bioinform., 2025

A Comparison of Data-Driven Shape Quantification Methods for 2D Microscopy Images.

Anna Foix Romero, Alexander Krull, Virginie Uhlmann

Proceedings of the IEEE/CVF International Conference on Computer Vision, ICCV 2025, 2025

2024

Noise contrastive estimation with soft targets for conditional models.

Johannes Hugger, Virginie Uhlmann

CoRR, 2024

2023

Simulating structurally variable nuclear pore complexes for microscopy.

Maria Theiss, Jean-Karim Hériché, Craig Russell, David Helekal, Alisdair Soppitt, Jonas Ries, Jan Ellenberg, Alvis Brazma, Virginie Uhlmann

Bioinform., October, 2023

2022

A Practical Guide to Supervised Deep Learning for Bioimage Analysis: Challenges and good practices.

Virginie Uhlmann, Laurène Donati, Daniel Sage

IEEE Signal Process. Mag., 2022

Editorial: Methods and Tools for Bioimage Analysis.

Florian Levet, Virginie Uhlmann, Florian Jug

Frontiers Comput. Sci., 2022

μMatch: 3D Shape Correspondence for Biological Image Data.

James Klatzow, Giovanni Dalmasso, Neus Martínez-Abadías, James Sharpe, Virginie Uhlmann

Frontiers Comput. Sci., 2022

Steer'n'Detect: fast 2D template detection with accurate orientation estimation.

Virginie Uhlmann, Zsuzsanna Püspöki, Adrien Depeursinge, Michael Unser, Daniel Sage, Julien Fageot

Bioinform., 2022

2021

Principled Design and Implementation of Steerable Detectors.

Julien Fageot, Virginie Uhlmann, Zsuzsanna Püspöki, Benjamin Beck, Michael Unser, Adrien Depeursinge

IEEE Trans. Image Process., 2021

Splinedist: Automated Cell Segmentation With Spline Curves.

Soham Mandal, Virginie Uhlmann

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Aura-Net: Robust Segmentation Of Phase-Contrast Microscopy Images with Few Annotations.

Ethan Cohen, Virginie Uhlmann

Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020

Dictionary Learning for Two-Dimensional Kendall Shapes.

Anna Song, Virginie Uhlmann, Julien Fageot, Michael Unser

SIAM J. Imaging Sci., 2020

Support and approximation properties of Hermite splines.

Julien Fageot, Shayan Aziznejad, Michael Unser, Virginie Uhlmann

J. Comput. Appl. Math., 2020

2019

A Learning-Based Formulation of Parametric Curve Fitting for Bioimage Analysis.

Soham Mandal, Virginie Uhlmann

Proceedings of the Numerical Mathematics and Advanced Applications ENUMATH 2019 - European Conference, Egmond aan Zee, The Netherlands, September 30, 2019

2018

DiversePathsJ: diverse shortest paths for bioimage analysis.

Virginie Uhlmann, Carsten Haubold, Fred A. Hamprecht, Michael Unser

Bioinform., 2018

2017

Multiresolution Subdivision Snakes.

Anais Badoual, Daniel Schmitter, Virginie Uhlmann, Michael Unser

IEEE Trans. Image Process., 2017

Gaussian and Sparse Processes Are Limits of Generalized Poisson Processes.

Julien Fageot, Virginie Uhlmann, Michael Unser

CoRR, 2017

General surface energy for spinal cord and aorta segmentation.

Harshit Gupta, Daniel Schmitter, Virginie Uhlmann, Michael Unser

Proceedings of the 14th IEEE International Symposium on Biomedical Imaging, 2017

Diverse M-Best Solutions by Dynamic Programming.

Carsten Haubold, Virginie Uhlmann, Michael Unser, Fred A. Hamprecht

Proceedings of the Pattern Recognition - 39th German Conference, 2017

2016

Hermite Snakes With Control of Tangents.

Virginie Uhlmann, Julien Fageot, Michael Unser

IEEE Trans. Image Process., 2016

Design of Steerable Wavelets to Detect Multifold Junctions.

Zsuzsanna Püspöki, Virginie Uhlmann, Cédric Vonesch, Michael Unser

IEEE Trans. Image Process., 2016

Maximally Localized Radial Profiles for Tight Steerable Wavelet Frames.

Pedram Pad, Virginie Uhlmann, Michael Unser

IEEE Trans. Image Process., 2016

CP-CHARM: segmentation-free image classification made accessible.

Virginie Uhlmann, Shantanu Singh, Anne E. Carpenter

BMC Bioinform., 2016

USER-friendly image-based segmentation and analysis of chromosomes.

Virginie Uhlmann, Ricard Delgado-Gonzalo, Michael Unser, Patrik Olavi Michel, Lucia Baldi, Florian Maria Wurm

Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015

Efficient Shape Priors for Spline-Based Snakes.

Ricard Delgado-Gonzalo, Daniel Schmitter, Virginie Uhlmann, Michael Unser

IEEE Trans. Image Process., 2015

Snakes on a Plane: A perfect snap for bioimage analysis.

Ricard Delgado-Gonzalo, Virginie Uhlmann, Daniel Schmitter, Michael Unser

IEEE Signal Process. Mag., 2015

Tip-seeking active contours for bioimage segmentation.

Virginie Uhlmann, Michael Unser

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014

Snakes with tangent-based control and energies for bioimage analysis.

Virginie Uhlmann, Ricard Delgado-Gonzalo, Michael Unser

Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

VOW: Variance-optimal wavelets for the steerable pyramid.

Pedram Pad, Virginie Uhlmann, Michael Unser

Proceedings of the 2014 IEEE International Conference on Image Processing, 2014

Exponential Hermite splines for the analysis of biomedical images.

Virginie Uhlmann, Ricard Delgado-Gonzalo, Costanza Conti, Lucia Romani, Michael Unser

Proceedings of the IEEE International Conference on Acoustics, 2014