Arif Canakoglu

Orcid: 0000-0003-4528-6586

According to our database1, Arif Canakoglu authored at least 36 papers between 2011 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Article 
PhD thesis 
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Bibliography

2023
VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants.
Database J. Biol. Databases Curation, 2023

2022
Investigating Deep Learning Based Breast Cancer Subtyping Using Pan-Cancer and Multi-Omic Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis.
ACM Trans. Comput. Heal., 2022

Genomic data integration and user-defined sample-set extraction for population variant analysis.
BMC Bioinform., 2022

ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time.
Bioinform., 2022

2021
ViruSurf: an integrated database to investigate viral sequences.
Nucleic Acids Res., 2021

EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species.
Database J. Biol. Databases Curation, 2021

Federated sharing and processing of genomic datasets for tertiary data analysis.
Briefings Bioinform., 2021

A review on viral data sources and search systems for perspective mitigation of COVID-19.
Briefings Bioinform., 2021

The road towards data integration in human genomics: players, steps and interactions.
Briefings Bioinform., 2021

Ensemble Feature Selection for Single Cell Chromatin Conformation Analysis.
Proceedings of the ICBBT 2021: 13th International Conference on Bioinformatics and Biomedical Technology, Xi'an, China, May 21, 2021

2020

Automated Integration of Genomic Metadata with Sequence-to-Sequence Models.
Proceedings of the Machine Learning and Knowledge Discovery in Databases. Applied Data Science and Demo Track, 2020

Performance Prediction for Data-driven Workflows on Apache Spark.
Proceedings of the 28th International Symposium on Modeling, 2020

Empowering Virus Sequence Research Through Conceptual Modeling.
Proceedings of the Conceptual Modeling - 39th International Conference, 2020

2019
PyGMQL: scalable data extraction and analysis for heterogeneous genomic datasets.
BMC Bioinform., 2019

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data.
Bioinform., 2019

GenoSurf: metadata driven semantic search system for integrated genomic datasets.
Database J. Biol. Databases Curation, 2019

Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study.
Proceedings of the Advances in Conceptual Modeling, 2019

From a Conceptual Model to a Knowledge Graph for Genomic Datasets.
Proceedings of the Conceptual Modeling - 38th International Conference, 2019

Evaluating Deep Semi-supervised Learning for Whole-Transcriptome Breast Cancer Subtyping.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Ontology-driven metadata enrichment for genomic datasets.
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

Exploring Genomic Datasets: from Batch to Interactive and Back.
Proceedings of the 5th International Workshop on Exploratory Search in Databases and the Web, 2018

Exploiting Ladder Networks for Gene Expression Classification.
Proceedings of the Bioinformatics and Biomedical Engineering, 2018

Demonstration of GenoMetric Query Language.
Proceedings of the 27th ACM International Conference on Information and Knowledge Management, 2018

Designing and Evaluating Deep Learning Models for Cancer Detection on Gene Expression Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

2017
Data-Driven Genomic Computing: Making sense of Signals from the Genome.
Proceedings of the Selected Papers of the XIX International Conference on Data Analytics and Management in Data Intensive Domains (DAMDID/RCDL 2017), 2017

Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome.
Proceedings of the Data Analytics and Management in Data Intensive Domains, 2017

Experiences in the Development of a Data Management System for Genomics.
Proceedings of the Data Management Technologies and Applications, 2017

2016
Modular schema based data warehousing of evolving, redundant and incomplete data: application to biomolecular knowledge data integration and inference.
PhD thesis, 2016

Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Biomolecular Annotation Integration and Querying to Help Unveiling New Biomedical Knowledge.
Proceedings of the Bioinformatics and Biomedical Engineering, 2016

2013
Integrative warehousing of biomolecular information to support complex multi-topic queries for biomedical knowledge discovery.
Proceedings of the 13th IEEE International Conference on BioInformatics and BioEngineering, 2013

2011
Integration of Biomolecular Interaction Data in a Genomic and Proteomic Data Warehouse to Support Biomedical Knowledge Discovery.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2011


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