Anna Bernasconi

According to our database, Anna Bernasconi authored at least 57 papers between 2017 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Supporting data and code for "Data-driven recombination detection in viral genomes".

Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri

Dataset, March, 2024

Supporting data and code for "Data-driven recombination detection in viral genomes".

Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri

Dataset, February, 2024

2023

Supporting data and code for "Data-driven recombination detection in viral genomes".

Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri

Dataset, November, 2023

Assessing the value of ontologically unpacking a conceptual model for human genomics.

Alberto García S., Anna Bernasconi, Giancarlo Guizzardi, Oscar Pastor, Veda C. Storey, José Ignacio Panach

Inf. Syst., September, 2023

PoliViews: A comprehensive and modular approach to the conceptual modeling of genomic data.

Anna Bernasconi, Alberto García S., Stefano Ceri, Oscar Pastor

Data Knowl. Eng., September, 2023

Supporting data and code for "Data-driven recombination detection in viral genomes".

Tommaso Alfonsi, Anna Bernasconi, Matteo Chiara, Stefano Ceri

Dataset, July, 2023

Supporting data for "CoVEffect: Interactive System for Mining the Effects of SARS-CoV-2 Mutations and Variants Based on Deep Learning".

Giuseppe Serna Garcia, Ruba Al Khalaf, Francesco Invernici, Anna Bernasconi, Stefano Ceri

Dataset, April, 2023

Model, Integrate, Search... Repeat - A Sound Approach to Building Integrated Repositories of Genomic Data

Anna Bernasconi

Lecture Notes in Business Information Processing 496, Springer, ISBN: 978-3-031-44907-9, 2023

Searching COVID-19 clinical research using graphical abstracts.

Francesco Invernici, Anna Bernasconi, Stefano Ceri

CoRR, 2023

Exploring the evolution of research topics during the COVID-19 pandemic.

Francesco Invernici, Anna Bernasconi, Stefano Ceri

CoRR, 2023

PG-Triggers: Triggers for Property Graphs.

Alessia Gagliardi, Anna Bernasconi, Davide Martinenghi, Stefano Ceri

CoRR, 2023

VariantHunter: a method and tool for fast detection of emerging SARS-CoV-2 variants.

Pietro Pinoli, Arif Canakoglu, Stefano Ceri, Matteo Chiara, Erika Ferrandi, Luca Minotti, Anna Bernasconi

Database J. Biol. Databases Curation, 2023

The Opportunity of Data-Driven Services for Viral Genomic Surveillance.

Anna Bernasconi

Proceedings of the IEEE International Conference on Service-Oriented System Engineering, 2023

OntoEffect: An OntoUML-Based Ontology to Explain SARS-CoV-2 Variants' Effects.

Ruba Al Khalaf, Anna Bernasconi, Alberto García S.

Proceedings of the 15th International Joint Conference on Knowledge Discovery, 2023

A Reference Meta-model to Understand DNA Variant Interpretation Guidelines.

Mireia Costa, Alberto García S., Ana León, Anna Bernasconi, Oscar Pastor

Proceedings of the Conceptual Modeling - 42nd International Conference, 2023

Ontological Representation of FAIR Principles: A Blueprint for FAIRer Data Sources.

Anna Bernasconi, Alberto García Simón, Giancarlo Guizzardi, Luiz Olavo Bonino da Silva Santos, Veda C. Storey

Proceedings of the Advanced Information Systems Engineering, 2023

2022

META-BASE: A Novel Architecture for Large-Scale Genomic Metadata Integration.

Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

GeCoAgent: A Conversational Agent for Empowering Genomic Data Extraction and Analysis.

Pietro Crovari, Sara Pidò, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Franca Garzotto, Stefano Ceri

ACM Trans. Comput. Heal., 2022

Semantic interoperability: ontological unpacking of a viral conceptual model.

Anna Bernasconi, Giancarlo Guizzardi, Oscar Pastor, Veda C. Storey

BMC Bioinform., 2022

Genomic data integration and user-defined sample-set extraction for population variant analysis.

Tommaso Alfonsi, Anna Bernasconi, Arif Canakoglu, Marco Masseroli

BMC Bioinform., 2022

ViruClust: direct comparison of SARS-CoV-2 genomes and genetic variants in space and time.

Luca Cilibrasi, Pietro Pinoli, Anna Bernasconi, Arif Canakoglu, Matteo Chiara, Stefano Ceri

Bioinform., 2022

GeMI: interactive interface for transformer-based Genomic Metadata Integration.

Giuseppe Serna Garcia, Michele Leone, Anna Bernasconi, Mark J. Carman

Database J. Biol. Databases Curation, 2022

Expressing Biological Problems with Logical Reasoning Languages.

Tommaso Alfonsi, Luigi Bellomarini, Anna Bernasconi, Stefano Ceri

Proceedings of the 16th International Rule Challenge and 6th Doctoral Consortium @ RuleML+RR 2022 co-located with 18th Reasoning Web Summer School (RW 2022) and 14th DecisionCAMP 2022 as part of Declarative AI 2022, Berlin, Germany (virtual due to Covid-19 pandemic), 26, 2022

A Sound and Repeatable Approach to Building Integrated Repositories of Genomic Data.

Anna Bernasconi

Proceedings of the 1st Italian Conference on Big Data and Data Science (itaDATA 2022), 2022

An Initial Empirical Assessment of an Ontological Model of the Human Genome.

Alberto García S., Anna Bernasconi, Giancarlo Guizzardi, Oscar Pastor, Veda C. Storey, Mireia Costa

Proceedings of the Advances in Conceptual Modeling, 2022

A Comprehensive Approach for the Conceptual Modeling of Genomic Data.

Anna Bernasconi, Alberto García S., Stefano Ceri, Oscar Pastor

Proceedings of the Conceptual Modeling - 41st International Conference, 2022

Conceptual models and databases for searching the genome.

Anna Bernasconi, Pietro Pinoli

Proceedings of the 25th International Conference on Extending Database Technology, 2022

An Ontological Characterization of a Conceptual Model of the Human Genome.

Alberto García S., Giancarlo Guizzardi, Oscar Pastor, Veda C. Storey, Anna Bernasconi

Proceedings of the Intelligent Information Systems, 2022

2021

Analysis of amino acid change dynamics reveals SARS-CoV-2 variant emergence.

Anna Bernasconi, Lorenzo Mari, Renato Casagrandi, Stefano Ceri

Dataset, July, 2021

Model, integrate, search... repeat: a sound approach to building integrated repositories of genomic data.

Anna Bernasconi

PhD thesis, 2021

ViruSurf: an integrated database to investigate viral sequences.

Arif Canakoglu, Pietro Pinoli, Anna Bernasconi, Tommaso Alfonsi, Damianos P. Melidis, Stefano Ceri

Nucleic Acids Res., 2021

A Conceptual Model for Geo-Online Exploratory Data Visualization: The Case of the COVID-19 Pandemic.

Anna Bernasconi, Silvia Grandi

Inf., 2021

TOrPEDO: witnessing model correctness with topological proofs.

Claudio Menghi, Alessandro Maria Rizzi, Anna Bernasconi, Paola Spoletini

Formal Aspects Comput., 2021

EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species.

Anna Bernasconi, Luca Cilibrasi, Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Pietro Pinoli, Arif Canakoglu

Database J. Biol. Databases Curation, 2021

A review on viral data sources and search systems for perspective mitigation of COVID-19.

Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Pietro Pinoli, Stefano Ceri

Briefings Bioinform., 2021

The road towards data integration in human genomics: players, steps and interactions.

Anna Bernasconi, Arif Canakoglu, Marco Masseroli, Stefano Ceri

Briefings Bioinform., 2021

Extreme Requirements Elicitation: Lessons Learnt from the COVID-19 Case Study.

Anna Bernasconi

Proceedings of the Joint Proceedings of REFSQ 2021 Workshops, 2021

CoV2K: A Knowledge Base of SARS-CoV-2 Variant Impacts.

Ruba Al Khalaf, Tommaso Alfonsi, Stefano Ceri, Anna Bernasconi

Proceedings of the Research Challenges in Information Science, 2021

Ontological Unpacking as Explanation: The Case of the Viral Conceptual Model.

Giancarlo Guizzardi, Anna Bernasconi, Oscar Pastor, Veda C. Storey

Proceedings of the Conceptual Modeling - 40th International Conference, 2021

2020

OpenGDC.

Fabio Cumbo, Eleonora Cappelli, Anna Bernasconi, Arif Canakoglu, Stefano Ceri, Marco Masseroli, Emanuel Weitschek

Dataset, August, 2020

Automated Integration of Genomic Metadata with Sequence-to-Sequence Models.

Giuseppe Cannizzaro, Michele Leone, Anna Bernasconi, Arif Canakoglu, Mark J. Carman

Proceedings of the Machine Learning and Knowledge Discovery in Databases. Applied Data Science and Demo Track, 2020

Integrating Topological Proofs with Model Checking to Instrument Iterative Design.

Claudio Menghi, Alessandro Maria Rizzi, Anna Bernasconi

Proceedings of the Fundamental Approaches to Software Engineering, 2020

Empowering Virus Sequence Research Through Conceptual Modeling.

Anna Bernasconi, Arif Canakoglu, Pietro Pinoli, Stefano Ceri

Proceedings of the Conceptual Modeling - 39th International Conference, 2020

2019

Biological and Medical Ontologies: Systems Biology Ontology (SBO).

Anna Bernasconi, Marco Masseroli

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: Human Phenotype Ontology (HPO).

Anna Bernasconi, Marco Masseroli

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Biological and Medical Ontologies: Disease Ontology (DO).

Anna Bernasconi, Marco Masseroli

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Processing of big heterogeneous genomic datasets for tertiary analysis of Next Generation Sequencing data.

Marco Masseroli, Arif Canakoglu, Pietro Pinoli, Abdulrahman Kaitoua, Andrea Gulino, Olha Horlova, Luca Nanni, Anna Bernasconi, Stefano Perna, Eirini Stamoulakatou, Stefano Ceri

Bioinform., 2019

GenoSurf: metadata driven semantic search system for integrated genomic datasets.

Arif Canakoglu, Anna Bernasconi, Andrea Colombo, Marco Masseroli, Stefano Ceri

Database J. Biol. Databases Curation, 2019

Exploiting Conceptual Modeling for Searching Genomic Metadata: A Quantitative and Qualitative Empirical Study.

Anna Bernasconi, Arif Canakoglu, Stefano Ceri

Proceedings of the Advances in Conceptual Modeling, 2019

From a Conceptual Model to a Knowledge Graph for Genomic Datasets.

Anna Bernasconi, Arif Canakoglu, Stefano Ceri

Proceedings of the Conceptual Modeling - 38th International Conference, 2019

Using GMQL-Web for Querying, Downloading and Integrating Public with Private Genomic Datasets.

Marzia Settino, Anna Bernasconi, Gaia Ceddia, Giuseppe Agapito, Marco Masseroli, Mario Cannataro

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2018

Ontology-driven metadata enrichment for genomic datasets.

Anna Bernasconi, Arif Canakoglu, Andrea Colombo, Stefano Ceri

Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

Using Metadata for Locating Genomic Datasets on a Global Scale.

Anna Bernasconi

Proceedings of the CIKM 2018 Workshops co-located with 27th ACM International Conference on Information and Knowledge Management (CIKM 2018), 2018

2017

From model checking to a temporal proof for partial models: preliminary example.

Anna Bernasconi, Claudio Menghi, Paola Spoletini, Lenore D. Zuck, Carlo Ghezzi

CoRR, 2017

From Model Checking to a Temporal Proof for Partial Models.

Anna Bernasconi, Claudio Menghi, Paola Spoletini, Lenore D. Zuck, Carlo Ghezzi

Proceedings of the Software Engineering and Formal Methods - 15th International Conference, 2017

Overview of GeCo: A Project for Exploring and Integrating Signals from the Genome.

Stefano Ceri, Anna Bernasconi, Arif Canakoglu, Andrea Gulino, Abdulrahman Kaitoua, Marco Masseroli, Luca Nanni, Pietro Pinoli

Proceedings of the Data Analytics and Management in Data Intensive Domains, 2017

Conceptual Modeling for Genomics: Building an Integrated Repository of Open Data.

Anna Bernasconi, Stefano Ceri, Alessandro Campi, Marco Masseroli

Proceedings of the Conceptual Modeling - 36th International Conference, 2017