Artem Cherkasov
Orcid: 0000-0002-1599-1439
According to our database1,
Artem Cherkasov
authored at least 48 papers
between 1998 and 2024.
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Bibliography
2024
PROTACable Is an Integrative Computational Pipeline of 3-D Modeling and Deep Learning To Automate the De Novo Design of PROTACs.
J. Chem. Inf. Model., 2024
2023
Large-Scale Virtual Screening for the Discovery of SARS-CoV-2 Papain-like Protease (PLpro) Non-covalent Inhibitors.
J. Chem. Inf. Model., April, 2023
Database J. Biol. Databases Curation, 2023
2022
Nat. Mach. Intell., 2022
DD-GUI: a graphical user interface for deep learning-accelerated virtual screening of large chemical libraries (Deep Docking).
Bioinform., 2022
2021
J. Chem. Inf. Model., 2021
COVID-19 Knowledge Extractor (COKE): A Curated Repository of Drug-Target Associations Extracted from the CORD-19 Corpus of Scientific Publications on COVID-19.
J. Chem. Inf. Model., 2021
2020
The Use of Methods of Computer-Aided Drug Discovery in the Development of Topoisomerase II Inhibitors: Applications and Future Directions.
J. Chem. Inf. Model., 2020
DeepCOP: deep learning-based approach to predict gene regulating effects of small molecules.
Bioinform., 2020
2019
Quantitative Structure-Price Relationship (QS$R) Modeling and the Development of Economically Feasible Drug Discovery Projects.
J. Chem. Inf. Model., 2019
Progressive Docking - Deep Learning Based Approach for Accelerated Virtual Screening.
Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2019 - 28th International Conference on Artificial Neural Networks, Munich, Germany, September 17-19, 2019, Proceedings, 2019
2018
Toxic Colors: The Use of Deep Learning for Predicting Toxicity of Compounds Merely from Their Graphic Images.
J. Chem. Inf. Model., 2018
CoRR, 2018
2017
Best Practices of Computer-Aided Drug Discovery: Lessons Learned from the Development of a Preclinical Candidate for Prostate Cancer with a New Mechanism of Action.
J. Chem. Inf. Model., 2017
SimBoost: a read-across approach for predicting drug-target binding affinities using gradient boosting machines.
J. Cheminformatics, 2017
2016
Cheminformatics Modeling of Adverse Drug Responses by Clinically Relevant Mutants of Human Androgen Receptor.
J. Chem. Inf. Model., 2016
2013
Identification of Novel Androgen Receptor Antagonists Using Structure- and Ligand-Based Methods.
J. Chem. Inf. Model., 2013
2012
J. Cheminformatics, 2012
2011
Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information.
J. Cheminformatics, 2011
Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of chemical information.
J. Comput. Aided Mol. Des., 2011
2010
Applicability Domains for Classification Problems: Benchmarking of Distance to Models for Ames Mutagenicity Set.
J. Chem. Inf. Model., 2010
Prediction of highly-connected 'hub'-proteins in protein interaction networks using QSAR.
J. Cheminformatics, 2010
Towards Improved Assessment of Functional Similarity in Large-Scale Screens: A Study on Indel Length.
J. Comput. Biol., 2010
2009
The Effect of Insertions and Deletions on Wirings in Protein-Protein Interaction Networks: A Large-Scale Study.
J. Comput. Biol., 2009
2008
Combinatorial QSAR Modeling of Chemical Toxicants Tested against Tetrahymena pyriformis.
J. Chem. Inf. Model., 2008
Using Molecular Docking, 3D-QSAR, and Cluster Analysis for Screening Structurally Diverse Data Sets of Pharmacological Interest.
J. Chem. Inf. Model., 2008
The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks.
BMC Syst. Biol., 2008
Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins.
BMC Bioinform., 2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
2007
Novel approaches for small biomolecule classification and structural similarity search.
SIGKDD Explor., 2007
Relationship between insertion/deletion (indel) frequency of proteins and essentiality.
BMC Bioinform., 2007
Bioinform., 2007
Proceedings of the Biocomputing 2007, 2007
2006
Comparative QSAR- and Fragments Distribution Analysis of Drugs, Druglikes, Metabolic Substances, and Antimicrobial Compounds.
J. Chem. Inf. Model., 2006
Can 'Bacterial-Metabolite-Likeness' Model Improve Odds of 'in Silico' Antibiotic Discovery?.
J. Chem. Inf. Model., 2006
Selective Targeting of Indel-inferred Differences in Spatial Structures of Homologous Proteins.
J. Bioinform. Comput. Biol., 2006
Distance based algorithms for small biomolecule classification and structural similarity search.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006
2005
'Inductive' Charges on Atoms in Proteins: Comparative Docking with the Extended Steroid Benchmark Set and Discovery of a Novel SHBG Ligand.
J. Chem. Inf. Model., 2005
2004
BMC Bioinform., 2004
Structural characterization of genomes by large scale sequence-structure threading: application of reliability analysis in structural genomics.
BMC Bioinform., 2004
An approach to large scale identification of non-obvious structural similarities between proteins.
BMC Bioinform., 2004
BMC Bioinform., 2004
2003
Inductive Electronegativity Scale. Iterative Calculation of Inductive Partial Charges.
J. Chem. Inf. Comput. Sci., 2003
2000
J. Chem. Inf. Comput. Sci., 2000
1999
Substituent Effects on Thermochemical Properties of C-, N-, O-, and S-Centered Radicals. Physical Interpretation of Substituent Effects.
J. Chem. Inf. Comput. Sci., 1999
1998
Substituent Effects on Thermochemical Properties of Free Radicals. New Substituent Scales for C-Centered Radicals.
J. Chem. Inf. Comput. Sci., 1998