Arthur J. Olson

According to our database, Arthur J. Olson authored at least 48 papers between 1981 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Structure-based virtual screening workflow to identify antivirals targeting HIV-1 capsid.

Qinfang Sun, Avik Biswas, R. S. K. Vijayan, Pierrick Craveur, Stefano Forli, Arthur J. Olson, Andres Emanuelli Castaner, Karen Kirby, Stefan G. Sarafianos, Nan-Jie Deng, Ronald M. Levy

J. Comput. Aided Mol. Des., 2022

2021

CellPAINT: Turnkey Illustration of Molecular Cell Biology.

Adam Gardner, Ludovic Autin, Daniel Fuentes, Martina Maritan, Benjamin A. Barad, Michaela Medina, Arthur J. Olson, Danielle A. Grotjahn, David S. Goodsell

Frontiers Bioinform., 2021

2020

Mesoscope: A Web-based Tool for Mesoscale Data Integration and Curation.

Ludovic Autin, Martina Maritan, Brett A. Barbaro, Adam Gardner, Arthur J. Olson, Michel F. Sanner, David S. Goodsell

Proceedings of the 3rd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, 2020

2019

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments.

David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2019

Integrative modeling of the HIV-1 ribonucleoprotein complex.

David S. Goodsell, Andrew Jewett, Arthur J. Olson, Stefano Forli

PLoS Comput. Biol., 2019

Massive-Scale Binding Free Energy Simulations of HIV Integrase Complexes Using Asynchronous Replica Exchange Framework Implemented on the IBM WCG Distributed Network.

Junchao Xia, William F. Flynn, Emilio Gallicchio, Keith Uplinger, Jonathan D. Armstrong, Stefano Forli, Arthur J. Olson, Ronald M. Levy

J. Chem. Inf. Model., 2019

Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations.

Nicholas Waldin, Manuela Waldner, Mathieu Le Muzic, M. Eduard Gröller, David S. Goodsell, Ludovic Autin, Arthur J. Olson, Ivan Viola

Comput. Graph. Forum, 2019

Parallel Generation and Visualization of Bacterial Genome Structures.

Tobias Klein, Peter Mindek, Ludovic Autin, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola

Comput. Graph. Forum, 2019

2018

Instant Construction and Visualization of Crowded Biological Environments.

Tobias Klein, Ludovic Autin, Barbora Kozlíková, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2018

CellPAINT: Interactive Illustration of Dynamic Mesoscale Cellular Environments.

Adam Gardner, Ludovic Autin, Brett Barbaro, Arthur J. Olson, David S. Goodsell

IEEE Computer Graphics and Applications, 2018

2016

Fragment-Based Analysis of Ligand Dockings Improves Classification of Actives.

Richard K. Belew, Stefano Forli, David S. Goodsell, T. J. O'Donnell, Arthur J. Olson

J. Chem. Inf. Model., 2016

2015

<i>AutoDockFR</i>: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.

Pradeep Anand Ravindranath, Stefano Forli, David S. Goodsell, Arthur J. Olson, Michel F. Sanner

PLoS Comput. Biol., 2015

A Virtual Screen Discovers Novel, Fragment-Sized Inhibitors of <i>Mycobacterium tuberculosis</i> InhA.

Alexander L. Perryman, Weixuan Yu, Xin Wang, Sean Ekins, Stefano Forli, Shao-Gang Li, Joel S. Freundlich, Peter J. Tonge, Arthur J. Olson

J. Chem. Inf. Model., 2015

2014

AutoDock4_Zn: An Improved AutoDock Force Field for Small-Molecule Docking to Zinc Metalloproteins.

Diogo Santos-Martins, Stefano Forli, Maria João Ramos, Arthur J. Olson

J. Chem. Inf. Model., 2014

Virtual screening with AutoDock Vina and the common pharmacophore engine of a low diversity library of fragments and hits against the three allosteric sites of HIV integrase: participation in the SAMPL4 protein-ligand binding challenge.

Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Diogo Santos-Martins, Arthur J. Olson

J. Comput. Aided Mol. Des., 2014

Blind prediction of HIV integrase binding from the SAMPL4 challenge.

David L. Mobley, Shuai Liu, Nathan M. Lim, Karisa L. Wymer, Alexander L. Perryman, Stefano Forli, Nan-Jie Deng, Justin Su, Kim Branson, Arthur J. Olson

J. Comput. Aided Mol. Des., 2014

Virtual screening of integrase inhibitors by large scale binding free energy calculations: the SAMPL4 challenge.

Emilio Gallicchio, Nan-Jie Deng, Peng He, Lauren Wickstrom, Alexander L. Perryman, Daniel N. Santiago, Stefano Forli, Arthur J. Olson, Ronald M. Levy

J. Comput. Aided Mol. Des., 2014

Visual Analytics for Biological Data.

Raghu Machiraju, Carsten Görg, Arthur J. Olson

IEEE Computer Graphics and Applications, 2014

Identifying Affordances of 3D Printed Tangible Models for Understanding Core Biological Concepts.

Jodi L. Davenport, Matt Silberglitt, Jon Boxerman, Arthur J. Olson

Proceedings of the Learning and Becoming in Practice: Proceedings of the 11th International Conference of the Learning Sciences, 2014

2013

Automated Docking with Protein Flexibility in the Design of Femtomolar "Click Chemistry" Inhibitors of Acetylcholinesterase.

Garrett M. Morris, Luke G. Green, Zoran Radic, Palmer Taylor, K. Barry Sharpless, Arthur J. Olson, Flavio Grynszpan

J. Chem. Inf. Model., 2013

2012

Protein Flexibility in Virtual Screening: The BACE-1 Case Study.

Sandro Cosconati, Luciana Marinelli, Francesco Saverio Di Leva, Valeria La Pietra, Angela De Simone, Francesca Mancini, Vincenza Andrisano, Ettore Novellino, David S. Goodsell, Arthur J. Olson

J. Chem. Inf. Model., 2012

uPy: A Ubiquitous CG Python API with Biological-Modeling Applications.

Ludovic Autin, Graham Johnson, Johan Hake, Arthur J. Olson, Michel F. Sanner

IEEE Computer Graphics and Applications, 2012

Cyclin-dependent kinases 5 template: Useful for virtual screening.

Siripit Pitchuanchom, Chantana Boonyarat, Stefano Forli, Arthur J. Olson, Chavi Yenjai

Comput. Biol. Medicine, 2012

2011

Robust Scoring Functions for Protein-Ligand Interactions with Quantum Chemical Charge Models.

Jui-Chih Wang, Jung-Hsin Lin, Chung-Ming Chen, Alex L. Perryman, Arthur J. Olson

J. Chem. Inf. Model., 2011

2010

AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading.

Oleg Trott, Arthur J. Olson

J. Comput. Chem., 2010

2009

AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility.

Garrett M. Morris, Ruth Huey, William Lindstrom, Michel F. Sanner, Richard K. Belew, David S. Goodsell, Arthur J. Olson

J. Comput. Chem., 2009

2008

Empirical entropic contributions in computational docking: Evaluation in APS reductase complexes.

Max W. Chang, Richard K. Belew, Kate S. Carroll, Arthur J. Olson, David S. Goodsell

J. Comput. Chem., 2008

2007

Analysis of HIV Wild-Type and Mutant Structures via in Silico Docking against Diverse Ligand Libraries.

Max W. Chang, William Lindstrom, Arthur J. Olson, Richard K. Belew

J. Chem. Inf. Model., 2007

A semiempirical free energy force field with charge-based desolvation.

Ruth Huey, Garrett M. Morris, Arthur J. Olson, David S. Goodsell

J. Comput. Chem., 2007

2005

Tangible Augmented Interfaces for Structural Molecular Biology.

Alexandre Gillet, Michel F. Sanner, Daniel Stoffler, Arthur J. Olson

IEEE Computer Graphics and Applications, 2005

2004

Augmented Reality with Tangible Auto-Fabricated Models for Molecular Biology Applications.

Alexandre Gillet, Michel F. Sanner, Daniel Stoffler, David S. Goodsell, Arthur J. Olson

Proceedings of the 15th IEEE Visualization Conference, 2004

Computer-linked autofabricated 3D models for teaching structural biology.

Alexandre Gillet, Suzanne Weghorst, William Winn, Daniel Stoffler, Michel F. Sanner, David S. Goodsell, Arthur J. Olson

Proceedings of the International Conference on Computer Graphics and Interactive Techniques, 2004

2003

Automated docking of ligands to an artificial active site: augmenting crystallographic analysis with computer modeling.

Robin J. Rosenfeld, David S. Goodsell, Rabi A. Musah, Garrett M. Morris, David B. Goodin, Arthur J. Olson

J. Comput. Aided Mol. Des., 2003

Integrating Biomolecular Analysis and Visual Programming: Flexibility and Interactivity in the Design of Bioinformatics Tools.

Daniel Stoffler, Sophie I. Coon, Ruth Huey, Arthur J. Olson, Michel F. Sanner

Proceedings of the 36th Hawaii International Conference on System Sciences (HICSS-36 2003), 2003

Role of Haptics in Teaching Structural Molecular Biolog.

Ganesh Sankaranarayanan, Suzanne Weghorst, Michel F. Sanner, Alexandre Gillet, Arthur J. Olson

Proceedings of the 11th International Symposium on Haptic Interfaces for Virtual Environment and Teleoperator Systems (HAPTICS 2003), 2003

2002

Segmentation and 3D visualization of high-resolution human brain cryosections.

Ikuko Takanashi, Eric B. Lum, Kwan-Liu Ma, Jörg Meyer, Bernd Hamann, Arthur J. Olson

Proceedings of the Visualization and Data Analysis 2002, 2002

1999

Integrating Computation and Visualization for Biomolecular Analysis: An Example Using Python and AVS.

Michel F. Sanner, Bruce S. Duncan, C. J. Carrillo, Arthur J. Olson

Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

1998

Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function.

Garrett M. Morris, David S. Goodsell, Robert S. Halliday, Ruth Huey, William E. Hart, Richard K. Belew, Arthur J. Olson

J. Comput. Chem., 1998

Computational Coevolution of Antiviral Drug Resistance.

Christopher D. Rosin, Richard K. Belew, Garrett M. Morris, Arthur J. Olson, David S. Goodsell

Artif. Life, 1998

1996

Lattice modeling: Accuracy of energy calculations.

Boris A. Reva, Michel F. Sanner, Arthur J. Olson, Alexei V. Finkelstein

J. Comput. Chem., 1996

Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4.

Garrett M. Morris, David S. Goodsell, Ruth Huey, Arthur J. Olson

J. Comput. Aided Mol. Des., 1996

Applications of Evolutionary Programming for the Prediction of Protein-Protein Interactions.

Bruce S. Duncan, Arthur J. Olson

Proceedings of the Fifth Annual Conference on Evolutionary Programming, 1996

1995

Constructing Lattice Models of Protein Chains with Side Groups.

Boris A. Reva, Dmitrii S. Rykunov, Arthur J. Olson, Alexei V. Finkelstein

J. Comput. Biol., 1995

Fast and Robust Computation of Molecular Surfaces.

Michel F. Sanner, Arthur J. Olson, Jean-Claude Spehner

Proceedings of the Eleventh Annual Symposium on Computational Geometry, 1995

1989

Molecular applications of volume rendering and 3-D texture maps.

David S. Goodsell, Arthur J. Olson

Proceedings of the 1989 Chapel Hill Workshop on Volume Visualization, 1989

1985

GRANNY, a companion to GRAMPS for the real-time manipulation of macromolecular models.

Michael L. Connolly, Arthur J. Olson

Comput. Chem., 1985

1983

Cooperative programming in crich ystallography.

Richard A. Alden, Gerard Bricogne, Stephan T. Freer, Sid R. Hall, Wayne A. Hendrickson, Penelope Anne Machin, Robert J. Munn, Arthur J. Olson, George N. Reeke Jr.

Comput. Chem., 1983

1981

GRAMPS - A graphics language interpreter for real-time, interactive, three-dimensional picture editing and animation.

T. J. O'Donnell, Arthur J. Olson

Proceedings of the 8th Annual Conference on Computer Graphics and Interactive Techniques, 1981