Barbora Kozlíková

According to our database, Barbora Kozlíková authored at least 61 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

InVADo: Interactive Visual Analysis of Molecular Docking Data.

Marco Schäfer, Nicolas Brich, Jan Byska, Sérgio M. Marques, David Bednár, Philipp Thiel, Barbora Kozlíková, Michael Krone

IEEE Trans. Vis. Comput. Graph., April, 2024

2023

A multimodal smartwatch-based interaction concept for immersive environments.

Matej Lang, Clemens Strobel, Felix Weckesser, Danielle Langlois, Enkelejda Kasneci, Barbora Kozlíková, Michael Krone

Comput. Graph., December, 2023

State of the Art of Molecular Visualization in Immersive Virtual Environments.

David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao

Comput. Graph. Forum, September, 2023

xOpat: eXplainable Open Pathology Analysis Tool.

Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, R. Nenutil, Jan Byska, Vít Rusnák

Comput. Graph. Forum, June, 2023

sMolBoxes: Dataflow Model for Molecular Dynamics Exploration.

Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska

IEEE Trans. Vis. Comput. Graph., 2023

Visualization of Biomedical Data - Shaping the Future and Building Bridges (Dagstuhl Seminar 23451).

Katja Bühler, Barbora Kozlíková, Michael Krone, Cagatay Turkay, Ramasamy Pathmanaban

Dagstuhl Reports, 2023

2022

Vivern-A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures.

David Kuták, Matias Nicolás Selzer, Jan Byska, Maria Luján Ganuza, Ivan Barisic, Barbora Kozlíková, Haichao Miao

IEEE Trans. Vis. Comput. Graph., 2022

LoopGrafter: a web tool for transplanting dynamical loops for protein engineering.

Joan Planas-Iglesias, Filip Opálený, Pavol Ulbrich, Jan Stourac, Zainab K. Sanusi, Gaspar R. P. Pinto, Andrea Schenkmayerova, Jan Byska, Jirí Damborský, Barbora Kozlíková, David Bednar

Nucleic Acids Res., 2022

ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework.

Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril

CoRR, 2022

2021

Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations.

Kristína Zákopcanová, Marko Rehácek, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Barbora Kozlíková

IEEE Trans. Vis. Comput. Graph., 2021

ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening.

María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková

IEEE Trans. Vis. Comput. Graph., 2021

HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models.

David Kouril, Tobias Isenberg, Barbora Kozlíková, Miriah Meyer, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2021

Foreword: Special section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2020.

Barbora Kozlíková, Michael Krone, Kay Nieselt, Renata G. Raidou, Noeska N. Smit

Comput. Graph., 2021

VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality.

Vojtech Bruza, Jan Byska, Jan Mican, Barbora Kozlíková

Comput. Graph., 2021

Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures.

Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski

Proceedings of the 9th International Conference on Learning Representations, 2021

2020

Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool.

Jan Byska, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková, Jan J. Palecek

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes.

Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska

IEEE Trans. Vis. Comput. Graph., 2020

Formalizing Biological and Medical Visualization (NII Shonan Meeting 167).

Renata Georgia Raidou, Barbora Kozlíková, Johanna Beyer, Timo Ropinski, Issei Fujishiro

NII Shonan Meet. Rep., 2020

Searching Multiple Approximate Solutions in Configuration Space to Guide Sampling-Based Motion Planning.

Vojtech Vonásek, Robert Penicka, Barbora Kozlíková

J. Intell. Robotic Syst., 2020

ProteiNN: Intrinsic-Extrinsic Convolution and Pooling for Scalable Deep Protein Analysis.

Pedro Hermosilla, Marco Schäfer, Matej Lang, Gloria Fackelmann, Pere-Pau Vázquez, Barbora Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski

CoRR, 2020

DockVis: Visual Analysis of Molecular Docking Trajectories.

Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský, Vojtech Vonásek, David Bednar, Jan Byska

Comput. Graph. Forum, 2020

The moving target of visualization software for an increasingly complex world.

Guido Reina, Hank Childs, Kresimir Matkovic, Katja Bühler, Manuela Waldner, David Pugmire, Barbora Kozlíková, Timo Ropinski, Patric Ljung, Takayuki Itoh, M. Eduard Gröller, Michael Krone

Comput. Graph., 2020

Foreword: Special Section on the Eurographics Workshop on Visual Computing for Biology and Medicine (EG VCBM) 2019.

Barbora Kozlíková, Bernhard Preim, Katja Bühler, Renata G. Raidou

Comput. Graph., 2020

PINGU Principles of Interactive Navigation for Geospatial Understanding.

Zoltán Orémus, Kahin Akram Hassan, Jirí Chmelík, Michaela Knazková, Jan Byska, Renata Georgia Raidou, Barbora Kozlíková

Proceedings of the 2020 IEEE Pacific Visualization Symposium, 2020

Case Studies for Working with Domain Experts.

Johanna Beyer, Charles D. Hansen, Mario Hlawitschka, Ingrid Hotz, Barbora Kozlíková, Gerik Scheuermann, Markus Stommel, Marc Streit, Johannes Waschke, Thomas Wischgoll, Yong Wan

Proceedings of the Foundations of Data Visualization., 2020

2019

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments.

David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2019

Visualization of Large Molecular Trajectories.

David Duran, Pedro Hermosilla, Timo Ropinski, Barbora Kozlíková, Àlvar Vinacua, Pere-Pau Vázquez

IEEE Trans. Vis. Comput. Graph., 2019

Sampling-Based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations.

Vojtech Vonásek, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková

J. Intell. Robotic Syst., 2019

Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization.

Jan Byska, Thomas Trautner, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková, Manuela Waldner

Comput. Graph. Forum, 2019

LOOPS: Visual Analysis Tool for Non-Periodic Protein Structures.

Pavol Ulbrich, Michal Hornák, Barbora Kozlíková

Proceedings of the 21st Eurographics Conference on Visualization, 2019

DockVis: Visual Analysis of Molecular Docking Data.

Katarína Furmanová, Barbora Kozlíková, Vojtech Vonásek, Jan Byska

Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine, 2019

Computing multiple guiding paths for sampling-based motion planning.

Vojtech Vonásek, Robert Penicka, Barbora Kozlíková

Proceedings of the 19th International Conference on Advanced Robotics, 2019

Visual Analysis of Ligand Trajectories in Molecular Dynamics.

Adam Jurcík, Katarína Furmanová, Jan Byska, Vojtech Vonásek, Ondrej Vávra, Pavol Ulbrich, Helwig Hauser, Barbora Kozlíková

Proceedings of the IEEE Pacific Visualization Symposium, 2019

2018

Instant Construction and Visualization of Crowded Biological Environments.

Tobias Klein, Ludovic Autin, Barbora Kozlíková, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2018

COZOID: contact zone identifier for visual analysis of protein-protein interactions.

Katarína Furmanová, Jan Byska, M. Eduard Gröller, Ivan Viola, Jan J. Palecek, Barbora Kozlíková

BMC Bioinform., 2018

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.

Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková

Bioinform., 2018

2017

Generating various composite human faces from real 3D facial images.

Igor Chalas, Petra Urbanova, Vojtech Jurík, Zuzana Ferkova, Marie Jandová, Jirí Sochor, Barbora Kozlíková

Vis. Comput., 2017

Visualization of Biomolecular Structures: State of the Art Revisited.

Barbora Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege

Comput. Graph. Forum, 2017

Comparative visualization of protein secondary structures.

Lucia Kocincová, Miroslava Jaresová, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková

BMC Bioinform., 2017

Interactive exploration of ligand transportation through protein tunnels.

Katarína Furmanová, Miroslava Jaresová, Jan Byska, Adam Jurcík, Július Parulek, Helwig Hauser, Barbora Kozlíková

BMC Bioinform., 2017

Watergate: Visual Exploration of Water Trajectories in Protein Dynamics.

Viktor Vad, Jan Byska, Adam Jurcík, Ivan Viola, M. Eduard Gröller, Helwig Hauser, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková

Proceedings of the VCBM 17: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017

Protein Tunnel Reprojection for Physico-Chemical Property Analysis.

Jan Malzahn, Barbora Kozlíková, Timo Ropinski

Proceedings of the VCBM 17: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017

AnthroVis: visual analysis of 3D mesh ensembles for forensic anthropology.

Katarína Furmanová, Petra Urbanová, Barbora Kozlíková

Proceedings of the 33rd Spring Conference on Computer Graphics, 2017

Tunnel detection in protein structures using sampling-based motion planning.

Vojtech Vonásek, Barbora Kozlíková

Proceedings of the 11th International Workshop on Robot Motion and Control, 2017

2016

AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics.

Jan Byska, Mathieu Le Muzic, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková

IEEE Trans. Vis. Comput. Graph., 2016

CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules.

Antonín Pavelka, Eva Sebestova, Barbora Kozlíková, Jan Brezovsky, Jirí Sochor, Jirí Damborský

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Visual Analysis of Biomolecular Cavities: State of the Art.

Michael Krone, Barbora Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Július Parulek, Hans-Christian Hege, Ivan Viola

Comput. Graph. Forum, 2016

Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics.

Ivan Kolesár, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková

Proceedings of the 6th Eurographics Workshop on Visual Computing for Biology and Medicine, 2016

Application of sampling-based path planning for tunnel detection in dynamic protein structures.

Vojtech Vonásek, Barbora Kozlíková

Proceedings of the 21st International Conference on Methods and Models in Automation and Robotics, 2016

Accelerated visualization of transparent molecular surfaces in molecular dynamics.

Adam Jurcík, Július Parulek, Jirí Sochor, Barbora Kozlíková

Proceedings of the 2016 IEEE Pacific Visualization Symposium, 2016

2015

MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids.

Jan Byska, Adam Jurcík, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková

Comput. Graph. Forum, 2015

Generation of Variable Human Faces from 3D Scan Dataset.

Igor Chalas, Zuzana Ferkova, Katarína Furmanová, Jiri Sochor, Barbora Kozlíková

Proceedings of the 7th International Conference on Games and Virtual Worlds for Serious Applications, 2015

Visualization of Biomolecular Structures: State of the Art.

Barbora Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Július Parulek, Hans-Christian Hege

Proceedings of the 17th Eurographics Conference on Visualization, 2015

Visibility-based approach to surface detection of tunnels in proteins.

Adam Jurcík, Jan Byska, Jirí Sochor, Barbora Kozlíková

Proceedings of the 31st Spring Conference on Computer Graphics, 2015

Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks.

Jan Byska, Ivana Kolingerová, Barbora Kozlíková, Jirí Sochor

Proceedings of the 31st Spring Conference on Computer Graphics, 2015

2014

CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.

Barbora Kozlíková, Eva Sebestova, Vilém Sustr, Jan Brezovsky, Ondrej Strnad, Lukas Daniel, David Bednar, Antonín Pavelka, Martin Manak, Martin Bezdeka, Petr Benes, Matus Kotry, Artur Góra, Jirí Damborský, Jiri Sochor

Bioinform., 2014

Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations.

Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor

Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine, 2014

Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures.

Ondrej Strnad, Barbora Kozlíková, Jiri Sochor

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2012

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures.

Eva Chovancová, Antonín Pavelka, Petr Benes, Ondrej Strnad, Jan Brezovsky, Barbora Kozlíková, Artur Góra, Vilém Sustr, Martin Klvana, Petr Medek, Lada Biedermannová, Jiri Sochor, Jirí Damborský

PLoS Comput. Biol., 2012

2010

CAVER Viewer - the explorer of behaviour of tunnels in proteins.

Barbora Kozlíková, Jirí Sochor

Proceedings of the 31st Annual Conference of the European Association for Computer Graphics, 2010

2007

Visualization of tunnels in protein molecules.

Barbora Kozlíková, Filip Andres, Jiri Sochor

Proceedings of the 5th International Conference on Computer Graphics, 2007