David Kouril

According to our database, David Kouril authored at least 18 papers between 2013 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

Design Space and Declarative Grammar for 3D Genomic Data Visualization.

David Kouril, Trevor Manz, Sehi L'Yi, Nils Gehlenborg

IEEE Trans. Vis. Comput. Graph., January, 2026

Uchimata: a toolkit for visualization of 3D genome structures on the web and in computational notebooks.

David Kouril, Trevor Manz, Tereza Clarence, Nils Gehlenborg

Bioinform., 2026

2025

GQVis: A Dataset of Genomics Data Questions and Visualizations for Generative AI.

Skylar Sargent Walters, Arthea Valderrama, Thomas C. Smits, David Kouril, Huyen N. Nguyen, Sehi L'Yi, Devin Lange, Nils Gehlenborg

CoRR, October, 2025

The challenge of chromatin model comparison and validation: A project from the first international 4D Nucleome Hackathon.

Jedrzej Kubica, Sevastianos Korsak, Krzysztof H. Banecki, Dvir Schirman, Anurupa Devi Yadavalli, Ariana Brenner Clerkin, David Kouril, Michal Kadlof, Ben Busby, Dariusz Plewczynski

PLoS Comput. Biol., 2025

2024

Virtual reality inspection of chromatin 3D and 2D data.

Elena Molina, David Kouril, Tobias Isenberg, Barbora Kozlíková, Pere-Pau Vázquez

Comput. Graph., 2024

2023

Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization.

David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., March, 2023

Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments.

Ruwayda Alharbi, Ondrej Strnad, Laura Rosalia Luidolt, Manuela Waldner, David Kouril, Ciril Bohak, Tobias Klein, Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., March, 2023

2022

Multiscale Unfolding: Illustratively Visualizing the Whole Genome at a Glance.

Sarkis Halladjian, David Kouril, Haichao Miao, M. Eduard Gröller, Ivan Viola, Tobias Isenberg

IEEE Trans. Vis. Comput. Graph., 2022

ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework.

Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril

CoRR, 2022

2021

Visualization Working Group at TU Wien: <i>Visible Facimus Quod Ceteri Non Possunt</i>.

Hsiang-Yun Wu, Aleksandr Amirkhanov, Nicolas Grossmann, Tobias Klein, David Kouril, Haichao Miao, Laura Rosalia Luidolt, Peter Mindek, Renata G. Raidou, Ivan Viola, Manuela Waldner, M. Eduard Gröller

Vis. Informatics, 2021

HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models.

David Kouril, Tobias Isenberg, Barbora Kozlíková, Miriah Meyer, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2021

2020

Scale Trotter: Illustrative Visual Travels Across Negative Scales.

Sarkis Halladjian, Haichao Miao, David Kouril, M. Eduard Gröller, Ivan Viola, Tobias Isenberg

IEEE Trans. Vis. Comput. Graph., 2020

Molecumentary: Scalable Narrated Documentaries Using Molecular Visualization.

David Kouril, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola

CoRR, 2020

2019

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments.

David Kouril, Ladislav Cmolík, Barbora Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur J. Olson, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2019

ScaleTrotter: Illustrative Visual Travels Across Negative Scales.

Sarkis Halladjian, Haichao Miao, David Kouril, M. Eduard Gröller, Ivan Viola, Tobias Isenberg

CoRR, 2019

2018

Visualization Multi-Pipeline for Communicating Biology.

Peter Mindek, David Kouril, Johannes Sorger, Daniel Toloudis, Blair Lyons, Graham Johnson, M. Eduard Gröller, Ivan Viola

IEEE Trans. Vis. Comput. Graph., 2018

Semantic Screen-Space Occlusion for Multiscale Molecular Visualization.

Thomas Bernhard Koch, David Kouril, Tobias Klein, Peter Mindek, Ivan Viola

Proceedings of the 8th Eurographics Workshop on Visual Computing for Biology and Medicine, 2018

2013

GeneDBase - Genetic Database of Selected Species of Mammals in the Czech Republic.

Ludek Skocovský, Tomás Sikula, Martin Ernst, David Kouril

Proceedings of the Environmental Software Systems. Fostering Information Sharing, 2013