Badrinath Roysam
Orcid: 0000-0002-8310-1389Affiliations:
- University of Houston, Department of Electrical Engineering, TX, USA
- Rensselaer Polytechnic Institute, Troy, USA
According to our database1,
Badrinath Roysam
authored at least 95 papers
between 1988 and 2023.
Collaborative distances:
Collaborative distances:
Awards
IEEE Fellow
IEEE Fellow 2018, "For contributions to image processing algorithms for biological microscopy".
Timeline
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Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on orcid.org
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on ecse.rpi.edu
On csauthors.net:
Bibliography
2023
Automated detection of apoptotic bodies and cells in label-free time-lapse high-throughput video microscopy using deep convolutional neural networks.
Bioinform., October, 2023
Automated Focus Restoration for High-throughput Phase Contrast Time-lapse Microscopy with De-noising Diffusion Probabilistic Model.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023
2022
Student Collaboration Improves Self-Supervised Learning: Dual-Loss Adaptive Masked Autoencoder for Brain Cell Image Analysis.
CoRR, 2022
2020
Automated Classification of Apoptosis in Phase Contrast Microscopy Using Capsule Network.
IEEE Trans. Medical Imaging, 2020
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020
Segmenting Continuous but Sparsely-Labeled Structures in Super-Resolution Microscopy Using Perceptual Grouping.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020
Correction to: Interpretable and Annotation-Efficient Learning for Medical Image Computing.
Proceedings of the Interpretable and Annotation-Efficient Learning for Medical Image Computing, 2020
2019
TIMING 2.0: high-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell grids.
Bioinform., 2019
2018
Placing Sites on the Edge of Planar Silicon Microelectrodes Enhances Chronic Recording Functionality.
IEEE Trans. Biomed. Eng., 2018
2017
Morphologically constrained spectral unmixing by dictionary learning for multiplex fluorescence microscopy.
Bioinform., 2017
2016
Blind Quality Metric for Multidistortion Images Based on Cartoon and Texture Decomposition.
IEEE Signal Process. Lett., 2016
Unsupervised Profiling of Microglial Arbor Morphologies and Distribution Using a Nonparametric Bayesian Approach.
IEEE J. Sel. Top. Signal Process., 2016
2015
IEEE Trans. Pattern Anal. Mach. Intell., 2015
Quantitative Arbor Analytics: Unsupervised Harmonic Co-Clustering of Populations of Brain Cell Arbors Based on L-Measure.
Neuroinformatics, 2015
Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING).
Bioinform., 2015
Population-scale three-dimensional reconstruction and quantitative profiling of microglia arbors.
Bioinform., 2015
2013
Unsupervised inference of arbor morphology progression for microglia from confocal microscope images.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013
Quantitative profiling of microglia populations using harmonic co-clustering of arbor morphology measurements.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013
2012
IEEE Trans. Geosci. Remote. Sens., 2012
Int. J. Comput. Biol. Drug Des., 2012
NetMets: software for quantifying and visualizing errors in biological network segmentation.
BMC Bioinform., 2012
Multi-temporal Globally-Optimal Dense 3-D Cell Segmentation and Tracking from Multi-photon Time-Lapse Movies of Live Tissue Microenvironments.
Proceedings of the Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, 2012
2011
Neuroinformatics, 2011
3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors.
Neuroinformatics, 2011
The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions.
Neuroinformatics, 2011
Medical Image Anal., 2011
Medical Image Anal., 2011
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011
Novel 4-D Open-Curve Active Contour and curve completion approach for automated tree structure extraction.
Proceedings of the 24th IEEE Conference on Computer Vision and Pattern Recognition, 2011
Metrics for comparing explicit representations of interconnected biological networks.
Proceedings of the 2011 IEEE Symposium on Biological Data Visualization, 2011
2010
Robust Adaptive 3-D Segmentation of Vessel Laminae From Fluorescence Confocal Microscope Images and Parallel GPU Implementation.
IEEE Trans. Medical Imaging, 2010
Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images.
IEEE Trans. Biomed. Eng., 2010
EURASIP J. Adv. Signal Process., 2010
Proceedings of the 2nd Workshop on Hyperspectral Image and Signal Processing: Evolution in Remote Sensing, 2010
Automatic and Reliable Extraction of Dendrite Backbone from Optical Microscopy Images.
Proceedings of the Life System Modeling and Intelligent Computing, 2010
Joint tracking and locomotion state recognition of C. elegans from time-lapse image sequences.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010
5-D imaging and parallel automated analysis of cellular events in living immune tissue microenvironments.
Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010
2009
IEEE Trans. Geosci. Remote. Sens., 2009
Automatic Summarization of Changes in Biological Image Sequences Using Algorithmic Information Theory.
IEEE Trans. Pattern Anal. Mach. Intell., 2009
MDL Constrained 3-D Grayscale Skeletonization Algorithm for Automated Extraction of Dendrites and Spines from Fluorescence Confocal Images.
Neuroinformatics, 2009
The Central Role of Neuroinformatics in the National Academy of Engineering's Grandest Challenge: Reverse Engineer the Brain.
Neuroinformatics, 2009
Spatio-temporal cell cycle phase analysis using level sets and fast marching methods.
Medical Image Anal., 2009
Proceedings of the Information Processing in Medical Imaging, 2009
2008
IEEE Trans. Inf. Technol. Biomed., 2008
Improved Detection of the Central Reflex in Retinal Vessels Using a Generalized Dual-Gaussian Model and Robust Hypothesis Testing.
IEEE Trans. Inf. Technol. Biomed., 2008
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Automatic summarization of changes in image sequences using algorithmic information theory.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008
Proceedings of the 42nd Asilomar Conference on Signals, Systems and Computers, 2008
2007
IEEE Trans. Medical Imaging, 2007
A Computational Model for <i>C. elegans</i> Locomotory Behavior: Application to Multiworm Tracking.
IEEE Trans. Biomed. Eng., 2007
Integrated Analysis of Vascular and Nonvascular Changes From Color Retinal Fundus Image Sequences.
IEEE Trans. Biomed. Eng., 2007
Automatic Identification of Retinal Arteries and Veins From Dual-Wavelength Images Using Structural and Functional Features.
IEEE Trans. Biomed. Eng., 2007
Automated 3-D Quantification of Brain Tissue at tThe Cellular Scale from Multi-Parameter Confocal Microscopy Images.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007
2006
Robust detection and classification of longitudinal changes in color retinal fundus images for monitoring diabetic retinopathy.
IEEE Trans. Biomed. Eng., 2006
IEEE Trans. Biomed. Eng., 2006
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Spatio-temporal cell cycle analysis using 3D level set segmentation of unstained nuclei in line scan confocal fluorescence images.
Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2006
Automated Change Analysis From Fluorescein Angiograms for Monitoring Wet Macular Degeneration.
Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006
2005
IEEE Trans. Image Process., 2005
IEEE Trans. Image Process., 2005
Proceedings of the Medical Imaging 2005: Image Processing, 2005
2004
Efficient Migration of Complex Off-Line Computer Vision Software to Real-Time System Implementation on Generic Computer Hardware.
IEEE Trans. Inf. Technol. Biomed., 2004
Model-Based Method for Improving the Accuracy and Repeatability of Estimating Vascular Bifurcations and Crossovers From Retinal Fundus Images.
IEEE Trans. Inf. Technol. Biomed., 2004
IEEE Trans. Inf. Technol. Biomed., 2004
Predictive scheduling algorithms for real-time feature extraction and spatial referencing: application to retinal image sequences.
IEEE Trans. Biomed. Eng., 2004
2003
The Dual Bootstrap Iterative Closest Point Algorithm with Application to Retinal Image Registration.
IEEE Trans. Medical Imaging, 2003
Median-based robust algorithms for tracing neurons from noisy confocal microscope images.
IEEE Trans. Inf. Technol. Biomed., 2003
Frame-Rate Spatial Referencing Based on Invariant Indexing and Alignment with Application to Online Retinal Image Registration.
IEEE Trans. Pattern Anal. Mach. Intell., 2003
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003
Computer Vision Algorithms for Quantifying the Growth and Behavior of Neurons Cultured on Nanofabricated Surfaces.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2003
2002
IEEE Trans. Inf. Technol. Biomed., 2002
A Feature-Based Technique for Joint Linear Estimation of High-Order Image-to-Mosaic Transformations: Mosaicing the Curved Human Retina.
IEEE Trans. Pattern Anal. Mach. Intell., 2002
A Feature-Based, Robust, Hierarchical Algorithm for Registering Pairs of Images of the Curved Human Retina.
IEEE Trans. Pattern Anal. Mach. Intell., 2002
Covariance-driven retinal image registration initialized from small sets of landmark correspondences.
Proceedings of the 2002 IEEE International Symposium on Biomedical Imaging, 2002
2001
Optimal scheduling of tracing computations for real-time vascular landmark extraction from retinal fundus images.
IEEE Trans. Inf. Technol. Biomed., 2001
Frame-Rate Spatial Referencing Based on Invariant Indexing and Alignment with Application to Laser Retinal Surgery.
Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2001), 2001
2000
A Feature-Based Technique for Joint, Linear Estimation of High-Order Image-to-Mosaic Transformations: Application to Mosaicing the Curved Human Retina.
Proceedings of the 2000 Conference on Computer Vision and Pattern Recognition (CVPR 2000), 2000
1999
Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms.
IEEE Trans. Inf. Technol. Biomed., 1999
Robust Hierarchical Algorithm for Constructing a Mosaic from Images of the Curved Human Retina.
Proceedings of the 1999 Conference on Computer Vision and Pattern Recognition (CVPR '99), 1999
1997
Int. J. Imaging Syst. Technol., 1997
1995
Adaptive 3-D segmentation algorithms for microscope images using local in-focus, and contrast features: application to Pap smears.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995
An improved watershed algorithm for counting objects in noisy, anisotropic 3-D biological images.
Proceedings of the Proceedings 1995 International Conference on Image Processing, 1995
1994
Joint solution of low, intermediate, and high-level vision tasks by evolutionary optimization: Application to computer vision at low SNR.
IEEE Trans. Neural Networks, 1994
1993
Proceedings of the 1993 International Conference on Parallel Processing, 1993
1992
Hierarchically structured unit-simplex transformations for parallel distributed optimization problems.
IEEE Trans. Neural Networks, 1992
Signal Process., 1992
Digit. Signal Process., 1992
1991
IEEE Trans. Neural Networks, 1991
1990
Stochastic representation of memoryless Boolean functions: application to boundary estimation at low contrast.
Proceedings of the 1990 International Conference on Acoustics, 1990
1989
A unified approach for hierarchical imaging based on joint hypothesis testing and parameter estimation.
Proceedings of the IEEE International Conference on Acoustics, 1989
1988
Bayesian imaging using Good's roughness measure-implementation on a massively parallel processor.
Proceedings of the IEEE International Conference on Acoustics, 1988