Camille Marchet

According to our database, Camille Marchet authored at least 11 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

<i>KaMRaT</i>: a C++ toolkit for <i>k</i>-mer count matrix dimension reduction.

Haoliang Xue, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessiere, Daniel Gautheret

Bioinform., March, 2024

2023

Scalable sequence database search using partitioned aggregated Bloom comb trees.

Camille Marchet, Antoine Limasset

Bioinform., 2023

Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching.

Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2021

BLight: efficient exact associative structure for k-mers.

Camille Marchet, Maël Kerbiriou, Antoine Limasset

Bioinform., 2021

2020

A resource-frugal probabilistic dictionary and applications in bioinformatics.

Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo

Discret. Appl. Math., 2020

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.

Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi

Bioinform., 2020

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.

Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi

Briefings Bioinform., 2020

2018

From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing. (Des lectures aux transcrits: méthodes de novo pour l'analyse du séquençage des transcriptomes de deuxième et troisième génération).

Camille Marchet

PhD thesis, 2018

2017

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.

Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix

Algorithms Mol. Biol., 2017

2016

A Resource-frugal Probabilistic Dictionary and Applications in (Meta)Genomics.

Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo

Proceedings of the Prague Stringology Conference 2016, 2016

2014

Navigating in a Sea of Repeats in RNA-seq without Drowning.

Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix

Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014