Camille Marchet

According to our database, Camille Marchet authored at least 20 papers between 2014 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2026

Vigemers: on the number of <i>k</i>-mers sharing the same XOR-based minimizer.

Florian Ingels, Antoine Limasset, Camille Marchet, Mikaël Salson

CoRR, February, 2026

Metappuccino: large language model-driven reconstruction of sequence read archive metadata for cancer research.

Fiona Hak, Camille Marchet, Daniel Gautheret, Mélina Gallopin

Bioinform., 2026

2025

Fractional hitting sets for efficient multiset sketching.

Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset

Algorithms Mol. Biol., December, 2025

<tt>CREMSA</tt>: compressed indexing of (ultra) large multiple sequence alignments.

Mikaël Salson, Arthur Boddaert, Awa Bousso Gueye, Laurent Bulteau, Yohan Hernandez-Courbevoie, Camille Marchet, Nan Pan, Sebastian Will, Yann Ponty

Bioinform., 2025

REINDEER2: Practical Abundance Index at Scale.

Yohan Hernandez-Courbevoie, Mikaël Salson, Chloé Bessière, Haoliang Xue, Daniel Gautheret, Camille Marchet, Antoine Limasset

Proceedings of the String Processing and Information Retrieval, 2025

A feeling for the index: <i>k</i>-mer data-structures for data reuse in large scale genomics and transcriptomics.

Camille Marchet

, 2025

2024

<i>KaMRaT</i>: a C++ toolkit for <i>k</i>-mer count matrix dimension reduction.

Haoliang Xue, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessière, Daniel Gautheret

Bioinform., March, 2024

On the number of <i>k</i>-mers admitting a given lexicographical minimizer.

Florian Ingels, Camille Marchet, Mikaël Salson

CoRR, 2024

Conway-Bromage-Lyndon (CBL): an exact, dynamic representation of <i>k</i>-mer sets.

Igor Martayan, Bastien Cazaux, Antoine Limasset, Camille Marchet

Bioinform., 2024

Cdbgtricks: Strategies to update a compacted de Bruijn graph.

Khodor Hannoush, Camille Marchet, Pierre Peterlongo

Proceedings of the Prague Stringology Conference 2024, 2024

2023

Scalable sequence database search using partitioned aggregated Bloom comb trees.

Camille Marchet, Antoine Limasset

Bioinform., 2023

Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching.

Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset

Proceedings of the 23rd International Workshop on Algorithms in Bioinformatics, 2023

2021

BLight: efficient exact associative structure for k-mers.

Camille Marchet, Maël Kerbiriou, Antoine Limasset

Bioinform., 2021

2020

A resource-frugal probabilistic dictionary and applications in bioinformatics.

Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo

Discret. Appl. Math., 2020

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.

Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi

Bioinform., 2020

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.

Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi

Briefings Bioinform., 2020

2018

From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing. (Des lectures aux transcrits: méthodes de novo pour l'analyse du séquençage des transcriptomes de deuxième et troisième génération).

Camille Marchet

PhD thesis, 2018

2017

Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.

Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix

Algorithms Mol. Biol., 2017

2016

A Resource-frugal Probabilistic Dictionary and Applications in (Meta)Genomics.

Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo

Proceedings of the Prague Stringology Conference 2016, 2016

2014

Navigating in a Sea of Repeats in RNA-seq without Drowning.

Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix

Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014