Daniel Gautheret

According to our database, Daniel Gautheret authored at least 19 papers between 1988 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

<i>KaMRaT</i>: a C++ toolkit for <i>k</i>-mer count matrix dimension reduction.

Haoliang Xue, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessiere, Daniel Gautheret

Bioinform., March, 2024

2021

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov

Nucleic Acids Res., 2021

2-kupl: mapping-free variant detection from DNA-seq data of matched samples.

Yunfeng Wang, Haoliang Xue, Christine Pourcel, Yang Du, Daniel Gautheret

BMC Bioinform., 2021

2020

REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets.

Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi

Bioinform., 2020

2018

CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins.

David Couvin, Aude Bernheim, Claire Toffano-Nioche, Marie Touchon, Juraj Michalik, Bertrand Néron, Eduardo P. C. Rocha, Gilles Vergnaud, Daniel Gautheret, Christine Pourcel

Nucleic Acids Res., 2018

A benchmark study of scoring methods for non-coding mutations.

Damien Drubay, Daniel Gautheret, Stefan Michiels

Bioinform., 2018

2015

A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events.

Jia Li, Marie-Anne Poursat, Damien Drubay, Arnaud Motz, Zohra Saci, Antonin Morillon, Stefan Michiels, Daniel Gautheret

PLoS Comput. Biol., 2015

2012

NAPP: the Nucleic Acid Phylogenetic Profile Database.

Alban Ott, Anouar Idali, Antonin Marchais, Daniel Gautheret

Nucleic Acids Res., 2012

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.

Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet

Adv. Bioinformatics, 2012

2008

Entropy Measures Quantify Global Splicing Disorders in Cancer.

William Ritchie, Samuel Granjeaud, Denis Puthier, Daniel Gautheret

PLoS Comput. Biol., 2008

Mireval: a web tool for simple microRNA prediction in genome sequences.

William Ritchie, François-Xavier Théodule, Daniel Gautheret

Bioinform., 2008

2006

Differential Repression of Alternative Transcripts: A Screen for miRNA Targets.

Matthieu Legendre, William Ritchie, Fabrice Lopez, Daniel Gautheret

PLoS Comput. Biol., 2006

AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation.

Vincent Le Texier, Jean-Jack M. Riethoven, Vasudev Kumanduri, Chellappa Gopalakrishnan, Fabrice Lopez, Daniel Gautheret, Thangavel Alphonse Thanaraj

BMC Bioinform., 2006

2005

Computing expectation values for RNA motifs using discrete convolutions.

André Lambert, Matthieu Legendre, Jean-Fred Fontaine, Daniel Gautheret

BMC Bioinform., 2005

Profile-based detection of microRNA precursors in animal genomes.

Matthieu Legendre, André Lambert, Daniel Gautheret

Bioinform., 2005

2004

The ERPIN server: an interface to profile-based RNA motif identification.

André Lambert, Jean-Fred Fontaine, Matthieu Legendre, Fabrice Leclerc, Emmanuelle Permal, François Major, Harald Putzer, Olivier Delfour, Bernard Michot, Daniel Gautheret

Nucleic Acids Res., 2004

1994

An RNA pattern matching program with enhanced performance and portability.

A. Laferriere, Daniel Gautheret, Robert Cedergren

Comput. Appl. Biosci., 1994

1990

Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA.

Daniel Gautheret, François Major, Robert Cedergren

Comput. Appl. Biosci., 1990

1988

A secondary and tertiary structure editor for nucleic acids.

Robert Cedergren, Daniel Gautheret, Guy Lapalme, François Major

Comput. Appl. Biosci., 1988