Daniel H. Huson

According to our database1, Daniel H. Huson authored at least 61 papers between 1992 and 2021.

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Bibliography

2021
On the Application of Advanced Machine Learning Methods to Analyze Enhanced, Multimodal Data from Persons Infected with COVID-19.
Comput., 2021

2020
Tegula - exploring a galaxy of two-dimensional periodic tilings.
CoRR, 2020

MAIRA- real-time taxonomic and functional analysis of long reads on a laptop.
BMC Bioinform., 2020

2018
Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Dynamics of the human gut phageome during antibiotic treatment.
Comput. Biol. Chem., 2018

2017
The Antibiotic Resistant Target Seeker (ARTS), an exploration engine for antibiotic cluster prioritization and novel drug target discovery.
Nucleic Acids Res., 2017

SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare?
BMC Genom., 2017

2016
MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data.
PLoS Comput. Biol., 2016

RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys.
BMC Bioinform., 2016

2014
A poor man's BLASTX - high-throughput metagenomic protein database search using PAUDA.
Bioinform., 2014

2012
Fast computation of minimum hybridization networks.
Bioinform., 2012

2011
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.
BMC Bioinform., 2011

Tanglegrams for rooted phylogenetic trees and networks.
Bioinform., 2011

2010
New common ancestor problems in trees and directed acyclic graphs.
Inf. Process. Lett., 2010

Short clones or long clones? A simulation study on the use of paired reads in metagenomics.
BMC Bioinform., 2010

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters.
Bioinform., 2010

Phylogenetic Networks - Concepts, Algorithms and Applications.
Cambridge University Press, ISBN: 978-0-521-75596-2, 2010

2009
Special Section: Phylogenetics.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Drawing Rooted Phylogenetic Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Methods for comparative metagenomics.
BMC Bioinform., 2009

Visual and statistical comparison of metagenomes.
Bioinform., 2009

Computing galled networks from real data.
Bioinform., 2009

2008
Improved Layout of Phylogenetic Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2008

Summarizing Multiple Gene Trees Using Cluster Networks.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008

2007
Dendroscope: An interactive viewer for large phylogenetic trees.
BMC Bioinform., 2007

OSLay: optimal syntenic layout of unfinished assemblies.
Bioinform., 2007

COPYCAT : cophylogenetic analysis tool.
Bioinform., 2007

Beyond Galled Trees - Decomposition and Computation of Galled Networks.
Proceedings of the Research in Computational Molecular Biology, 2007

etagenome Analysis using Megan.
Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006
CrossLink: visualization and exploration of sequence relationships between (micro) RNAs.
Nucleic Acids Res., 2006

Identification of plant microRNA homologs.
Bioinform., 2006

Reducing Distortion in Phylogenetic Networks.
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

2005
Whole-genome prokaryotic phylogeny.
Bioinform., 2005

Reconstruction of Reticulate Networks from Gene Trees.
Proceedings of the Research in Computational Molecular Biology, 2005

Computing recombination networks from binary sequences.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

2004
Phylogenetic Super-Networks from Partial Trees.
IEEE ACM Trans. Comput. Biol. Bioinform., 2004

Constructing Splits Graphs.
IEEE ACM Trans. Comput. Biol. Bioinform., 2004

Phylogenetic trees based on gene content.
Bioinform., 2004

VisRD--visual recombination detection.
Bioinform., 2004

Syntenic Layout of Two Assemblies of Related Genomes.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

2003
Distance Corrections on Recombinant Sequences.
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

A meta-viewer for biomolecular data.
Proceedings of the 33. Jahrestagung der Gesellschaft für Informatik, Innovative Informatikanwendungen, INFORMATIK 2003, Frankfurt am Main, Germany, September 29, 2003

2002
The greedy path-merging algorithm for contig scaffolding.
J. ACM, 2002

Segment Match Refinement and Applications.
Proceedings of the Algorithms in Bioinformatics, Second International Workshop, 2002

2001
Comparing Assemblies Using Fragments and Mate-Pairs.
Proceedings of the Algorithms in Bioinformatics, First International Workshop, 2001

The greedy path-merging algorithm for sequence assembly.
Proceedings of the Fifth Annual International Conference on Computational Biology, 2001

Visualization challenges for a new cyberpharmaceutical computing paradigm.
Proceedings of the IEEE 2001 Symposium on Parallel and Large-Data Visualization and Graphics, 2001

Design of a compartmentalized shotgun assembler for the human genome.
Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

2000
4-Regular Vertex-Transitive Tilings of E<sup>3</sup>.
Discret. Comput. Geom., 2000

The Conserved Exon Method for Gene Finding.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1999
Hybrid Tree Reconstruction Methods.
ACM J. Exp. Algorithmics, 1999

Disk-Covering, a Fast-Converging Method for Phylogenetic Tree Reconstruction.
J. Comput. Biol., 1999

Tiling Space by Platonic Solids, I.
Discret. Comput. Geom., 1999

Estimating Large Distances in Phylogenetic Reconstruction.
Proceedings of the Algorithm Engineering, 1999

Obtaining highly accurate topology estimates of evolutionary trees from very short sequences.
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

Solving Large Scale Phylogenetic Problems using DCM2.
Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998
Two Finiteness Theorems for Periodic Tilings of d-Dimensional Euclidean Space.
Discret. Comput. Geom., 1998

SplitsTree: analyzing and visualizing evolutionary data.
Bioinform., 1998

1996
Analyzing and Visualizing Sequence and Distance Data Using SplitsTree.
Discret. Appl. Math., 1996

1995
Visualization of Periodic Tilings.
Proceedings of the Visualization and Mathematics, 1995

1992
The Classification of Quasi-Regular Polyhedra of Genus 2.
Discret. Comput. Geom., 1992


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