Daniele D'Agostino

According to our database1, Daniele D'Agostino authored at least 97 papers between 2002 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Automatic Passenger Counting on the Edge via Unsupervised Clustering.
Sensors, 2023

<i>InCliniGene</i> enables high-throughput and comprehensive <i>in vivo</i> clonal tracking toward clinical genomics data integration.
Database J. Biol. Databases Curation, 2023

2021
Guest Editorial: Special Section on New Trends in Parallel and Distributed Computing for Human Sensible Applications.
IEEE Trans. Emerg. Top. Comput., 2021

Hardware and Software Solutions for Energy-Efficient Computing in Scientific Programming.
Sci. Program., 2021

Editorial: Heterogeneous Computing for AI and Big Data in High Energy Physics.
Frontiers Big Data, 2021

Advantages of using graph databases to explore chromatin conformation capture experiments.
BMC Bioinform., 2021

2020
Special issue on multimedia fog/edge computing systems.
Multim. Syst., 2020

A secure cloud-edges computing architecture for metagenomics analysis.
Future Gener. Comput. Syst., 2020

A citizen science exploration of the X-ray transient sky using the EXTraS science gateway.
Future Gener. Comput. Syst., 2020

On low-power SoCs as storage bricks for Bioinformatics.
Concurr. Comput. Pract. Exp., 2020

Latest advances in parallel, distributed, and network-based processing.
Concurr. Comput. Pract. Exp., 2020

2019
Json-GUI - A module for the dynamic generation of form-based web interfaces.
SoftwareX, 2019

Guest editorials: Special issue on fog/edge networking for multimedia applications.
Peer-to-Peer Netw. Appl., 2019

Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types.
J. Parallel Distributed Comput., 2019

Using Apache Airavata and EasyGateway for the creation of complex science gateway front-end.
Future Gener. Comput. Syst., 2019

A science gateway for Exploring the X-ray Transient and variable sky using EGI Federated Cloud.
Future Gener. Comput. Syst., 2019

SoC-based computing infrastructures for scientific applications and commercial services: Performance and economic evaluations.
Future Gener. Comput. Syst., 2019

Combining Edge and Cloud computing for low-power, cost-effective metagenomics analysis.
Future Gener. Comput. Syst., 2019

Parallel Computing in Deep Learning: Bioinformatics Case Studiesa.
Proceedings of the 27th Euromicro International Conference on Parallel, 2019

NeoHiC: A Web Application for the Analysis of Hi-C Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018
Low-power portable devices for metagenomics analysis: Fog computing makes bioinformatics ready for the Internet of Things.
Future Gener. Comput. Syst., 2018

Low-Power Storage Bricks and Bioinformatics on Systems-On-Chip.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

Computing Empirical P-Values for Estimating Gene-Gene Interactions in Genome-Wide Association Studies: A Parallel Computing Approach.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

2017
Porting bioinformatics applications from grid to cloud: A macromolecular surface analysis application case study.
Int. J. High Perform. Comput. Appl., 2017

A stakeholder consultation into hydro-meteorological e-science environments.
Earth Sci. Informatics, 2017

Implementing a Space-Aware Stochastic Simulator on Low-Power Architectures: A Systems Biology Case Study.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

Low-Power Architectures for miRNA-Target Genome Wide Analysis.
Proceedings of the 25th Euromicro International Conference on Parallel, 2017

MOEA-Based Brokering for Hybrid Clouds.
Proceedings of the 2017 International Conference on High Performance Computing & Simulation, 2017

Integrating Heterogeneous Weather-Sensors Data into a Smart-City App.
Proceedings of the 2017 International Conference on High Performance Computing & Simulation, 2017

Performance and Economic Evaluations in Adopting Low Power Architectures: A Real Case Analysis.
Proceedings of the Economics of Grids, Clouds, Systems, and Services, 2017

2016
A microservice-based portal for X-ray transient and variable sources.
PeerJ Prepr., 2016

From Lesson Learned to the Refactoring of the DRIHM Science Gateway for Hydro-meteorological Research.
J. Grid Comput., 2016

Delivering cloud services with QoS requirements: Business opportunities, architectural solutions and energy-saving aspects.
Future Gener. Comput. Syst., 2016

Lessons learned implementing a science gateway for hydro-meteorological research.
Concurr. Comput. Pract. Exp., 2016

MicroRNA-Target Interaction: A Parallel Approach for Computing Pairing Energy.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

2015
Scheduling strategies for enabling meteorological simulation on hybrid clouds.
J. Comput. Appl. Math., 2015

An MPI-CUDA library for image processing on HPC architectures.
J. Comput. Appl. Math., 2015

A parallel isosurface extraction component for visualization pipelines executing on GPU clusters.
J. Comput. Appl. Math., 2015

A Hybrid Parallel Implementation of Model Selection for Support Vector Machines.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

Clustering Protein Structures with Hadoop.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014
Heterogeneous architectures for computational intensive applications: A cost-effectiveness analysis.
J. Comput. Appl. Math., 2014

Profiling e-Science infrastructures with kernel and application benchmarks.
Int. J. Grid Util. Comput., 2014

Latest advances in distributed, parallel, and graphic processing unit accelerated approaches to computational biology.
Concurr. Comput. Pract. Exp., 2014

CUDA accelerated molecular surface generation.
Concurr. Comput. Pract. Exp., 2014

The DRIHM Project: A Flexible Approach to Integrate HPC, Grid and Cloud Resources for Hydro-Meteorological Research.
Proceedings of the International Conference for High Performance Computing, 2014

The WNoDeS Cloud Virtualization Framework: A Macromolecular Surface Analysis Application Case Study.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014

A CUDA Implementation of the Spatial TAU-Leaping in Crowded Compartments (STAUCC) Simulator.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014


A Fine-Grained CUDA Implementation of the Multi-objective Evolutionary Approach NSGA-II: Potential Impact for Computational and Systems Biology Applications.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

WS-PGRADE/gUSE in European Projects.
Proceedings of the Science Gateways for Distributed Computing Infrastructures, 2014

2013
Hybrid Clouds brokering: Business opportunities, QoS and energy-saving issues.
Simul. Model. Pract. Theory, 2013

A QoS-aware broker for hybrid clouds.
Computing, 2013

A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems.
Proceedings of the 21st Euromicro International Conference on Parallel, 2013

2012
DRIHM: Distributed Research Infrastructure for Hydro-Meteorology.
Proceedings of the 7th International Conference on System of Systems Engineering, 2012

A CUDA-based Implementation of the SSAKE Genomics Application.
Proceedings of the 20th Euromicro International Conference on Parallel, 2012

Efficiency-Aware Jobs Allocation for e-Science Environments.
Proceedings of the 20th Euromicro International Conference on Parallel, 2012

Delivering Cloud Services with QoS Requirements: An Opportunity for ICT SMEs.
Proceedings of the Economics of Grids, Clouds, Systems, and Services, 2012

2011
Image-Based Surface Matching Algorithm Oriented to Structural Biology.
IEEE ACM Trans. Comput. Biol. Bioinform., 2011

Parallel isosurface extraction for 3D data analysis workflows in distributed environments.
Concurr. Comput. Pract. Exp., 2011

Towards a Grid Infrastructure for hydro-Meteorological Research.
Comput. Sci., 2011

CUDA Accelerated Blobby Molecular Surface Generation.
Proceedings of the Parallel Processing and Applied Mathematics, 2011

Parallelization of the SSAKE Genomics Application.
Proceedings of the 19th International Euromicro Conference on Parallel, 2011

2010
Matching Jobs with Resources: an application-driven approach.
Scalable Comput. Pract. Exp., 2010

Job-resource matchmaking on Grid through two-level benchmarking.
Future Gener. Comput. Syst., 2010

A Parallel Algorithm for Molecular Surface Matching Through Image Representation.
Proceedings of the 18th Euromicro Conference on Parallel, 2010

2009
Efficient management of resources and entities using the HyVonNe P2P architecture.
Int. J. Grid Util. Comput., 2009

A Grid framework to enable parallel and concurrent TMA image analyses.
Int. J. Grid Util. Comput., 2009

Performance Based Matchmaking on Grid.
Proceedings of the Parallel Processing and Applied Mathematics, 2009

Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening.
Proceedings of the 17th Euromicro International Conference on Parallel, 2009

A Performance-Based Methodology to Improve Grid Exploitation.
Proceedings of the Integrated Management of Systems, 2009

2008
A parallel protein surface reconstruction system.
Int. J. Bioinform. Res. Appl., 2008

A Grid Service based Parallel Molecular Surface Reconstruction System.
Proceedings of the 16th Euromicro International Conference on Parallel, 2008

Managing Networks of Mobiles Entities Using the HyVonNe P2P Architecture.
Proceedings of the Second International Conference on Complex, 2008

Enabling Parallel TMA Image Analysis in a Grid Environment.
Proceedings of the Second International Conference on Complex, 2008

A Distributed Approach for Structured Resource Discovery on Grid.
Proceedings of the Second International Conference on Complex, 2008

TMAinspect, an EGEE Framework for Tissue MicroArray Image Handling.
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

Images Based System for Surface Matching in Macromolecular Screening.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing.
Proceedings of the Parallel Computing: Architectures, 2007

A Parallel Workflow for the Reconstruction of Molecular Surfaces.
Proceedings of the Parallel Computing: Architectures, 2007

Parallel I/O Aspects in PIMA(GE).
Proceedings of the Parallel Computing: Architectures, 2007

Tissue MicroArray: a Distributed Grid Approach for Image Analysis.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007

2006
Designing parallel programs for 3D data processing on distributed architectures.
PhD thesis, 2006

Resource Selection and Application Execution in a Grid: A Migration Experience from GT2 to GT4.
Proceedings of the On the Move to Meaningful Internet Systems 2006: CoopIS, 2006

2005
High performance workflow implementation for protein surface characterization using grid technology.
BMC Bioinform., 2005

Load Balancing and Computing Strategies in Pipeline Optimization for Parallel Visualization of 3D Irregular Meshes.
Proceedings of the Recent Advances in Parallel Virtual Machine and Message Passing Interface, 2005

Using a CCA Compliant Framework for Parallel Remote Visualization.
Proceedings of the 13th Euromicro Workshop on Parallel, 2005

Parallel Compression of 3D Meshes for Efficient Distributed Visualization.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

A Parallel IMAGE Processing Server for Distributed Applications.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

An Object Interface for Interoperability of Image Processing Parallel Library in a Distributed Environment.
Proceedings of the Image Analysis and Processing, 2005

Using Parallel Isosurface Extraction in Superficial Molecular Modeling.
Proceedings of the 1st International Conference on Distributed Frameworks for Multimedia Applications (DFMA 2005), 2005

2004
Using a Structured Programming Environment for Parallel Remote Visualization.
Proceedings of the Euro-Par 2004 Parallel Processing, 2004

2003
Evolutions in parallel distributed and network-based processing.
J. Syst. Archit., 2003

An Online Parallel Algorithm for Remote Visualization of Isosurfaces.
Proceedings of the Recent Advances in Parallel Virtual Machine and Message Passing Interface,10th European PVM/MPI Users' Group Meeting, Venice, Italy, September 29, 2003

Smart Data Caching in Archeological Wireless Applications: the PAST Solution.
Proceedings of the 11th Euromicro Workshop on Parallel, 2003

Parallel Decimation of 3D Meshes for Efficient Web-Based Isosurface Extraction.
Proceedings of the Parallel Computing: Software Technology, 2003

A Web-Based Isosurface Extraction System for Heterogeneous Clients.
Proceedings of the 29th EUROMICRO Conference 2003, 2003

2002
A Local Decision Algorithm for Maximum Lifetime in ad Hoc Networks.
Proceedings of the Euro-Par 2002, 2002


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