Marco Aldinucci

Orcid: 0000-0001-8788-0829

According to our database1, Marco Aldinucci authored at least 154 papers between 2001 and 2024.

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Bibliography

2024
<i>FedER</i>: Federated Learning through Experience Replay and privacy-preserving data synthesis.
Comput. Vis. Image Underst., January, 2024

Experimenting With Normalization Layers in Federated Learning on Non-IID Scenarios.
IEEE Access, 2024

Secure Generic Remote Workflow Execution with TEEs.
Proceedings of the 2nd Workshop on Workflows in Distributed Environments, 2024

Benchmarking Parallelization Models through Karmarkar's Interior-point method.
Proceedings of the 32nd Euromicro International Conference on Parallel, 2024

2023
MERGE: A model for multi-input biomedical federated learning.
Patterns, November, 2023

The MPI + CUDA Gaia AVU-GSR Parallel Solver Toward Next-generation Exascale Infrastructures.
CoRR, 2023

Experimenting with Emerging ARM and RISC-V Systems for Decentralised Machine Learning.
CoRR, 2023

A Federated Learning Benchmark for Drug-Target Interaction.
Proceedings of the Companion Proceedings of the ACM Web Conference 2023, 2023

Boosting Methods for Federated Learning.
Proceedings of the 31st Symposium of Advanced Database Systems, 2023


RISC-V-Based Platforms for HPC: Analyzing Non-functional Properties for Future HPC and Big-Data Clusters.
Proceedings of the Embedded Computer Systems: Architectures, Modeling, and Simulation, 2023

Pooling critical datasets with Federated Learning.
Proceedings of the 31st Euromicro International Conference on Parallel, 2023

The SWH-Analytics Framework.
Proceedings of the 2nd Italian Conference on Big Data and Data Science (ITADATA 2023), 2023

Experience Replay as an Effective Strategy for Optimizing Decentralized Federated Learning.
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

CAPIO: a Middleware for Transparent I/O Streaming in Data- Intensive Workflows.
Proceedings of the 30th IEEE International Conference on High Performance Computing, 2023

Model-Agnostic Federated Learning.
Proceedings of the Euro-Par 2023: Parallel Processing - 29th International Conference on Parallel and Distributed Computing, Limassol, Cyprus, August 28, 2023

Efficiently Distributed Federated Learning.
Proceedings of the Euro-Par 2023: Parallel Processing Workshops - Euro-Par 2023 International Workshops, Limassol, Cyprus, August 28, 2023

Hercules: Scalable and Network Portable In-Memory Ad-Hoc File System for Data-Centric and High-Performance Applications.
Proceedings of the Euro-Par 2023: Parallel Processing - 29th International Conference on Parallel and Distributed Computing, Limassol, Cyprus, August 28, 2023

Porting the Variant Calling Pipeline for NGS data in cloud-HPC environment.
Proceedings of the 47th IEEE Annual Computers, Software, and Applications Conference, 2023

Towards formal model for location aware workflows.
Proceedings of the 47th IEEE Annual Computers, Software, and Applications Conference, 2023

A Proposal for a Continuum-aware Programming Model: From Workflows to Services Autonomously Interacting in the Compute Continuum.
Proceedings of the 47th IEEE Annual Computers, Software, and Applications Conference, 2023

Experimenting with Emerging RISC-V Systems for Decentralised Machine Learning.
Proceedings of the 20th ACM International Conference on Computing Frontiers, 2023

Adaptive multi-tier intelligent data manager for Exascale.
Proceedings of the 20th ACM International Conference on Computing Frontiers, 2023

2022
Towards EXtreme scale technologies and accelerators for euROhpc hw/Sw supercomputing applications for exascale: The TEXTAROSSA approach.
Microprocess. Microsystems, November, 2022

Distributed workflows with Jupyter.
Future Gener. Comput. Syst., 2022

Modelling Biological and Ecological Systems with the Calculus of Wrapped Compartments.
CoRR, 2022

Decentralized Distributed Learning with Privacy-Preserving Data Synthesis.
CoRR, 2022

The Gaia AVU-GSR parallel solver: Preliminary studies of a LSQR-based application in perspective of exascale systems.
Astron. Comput., 2022

Benchmarking FedAvg and FedCurv for Image Classification Tasks.
Proceedings of the 1st Italian Conference on Big Data and Data Science (itaDATA 2022), 2022

Boosting the Federation: Cross-Silo Federated Learning without Gradient Descent.
Proceedings of the International Joint Conference on Neural Networks, 2022

Neural Transformers for Intraductal Papillary Mucosal Neoplasms (IPMN) Classification in MRI images.
Proceedings of the 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2022

The DeepHealth Toolkit: A Key European Free and Open-Source Software for Deep Learning and Computer Vision Ready to Exploit Heterogeneous HPC and Cloud Architectures.
Proceedings of the Technologies and Applications for Big Data Value, 2022

2021
StreamFlow: Cross-Breeding Cloud With HPC.
IEEE Trans. Emerg. Top. Comput., 2021

Hardware and Software Solutions for Energy-Efficient Computing in Scientific Programming.
Sci. Program., 2021

Practical parallelization of scientific applications with OpenMP, OpenACC and MPI.
J. Parallel Distributed Comput., 2021

The CLAIRE COVID-19 initiative: approach, experiences and recommendations.
Ethics Inf. Technol., 2021

Bringing AI pipelines onto cloud-HPC: setting a baseline for accuracy of COVID-19 AI diagnosis.
CoRR, 2021

Advantages of using graph databases to explore chromatin conformation capture experiments.
BMC Bioinform., 2021

An explainable AI system for automated COVID-19 assessment and lesion categorization from CT-scans.
Artif. Intell. Medicine, 2021

Interpretable Deep Model For Predicting Gene-Addicted Non-Small-Cell Lung Cancer In Ct Scans.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

HPC Application Cloudification: The StreamFlow Toolkit (Invited Paper).
Proceedings of the 12th Workshop on Parallel Programming and Run-Time Management Techniques for Many-core Architectures and 10th Workshop on Design Tools and Architectures for Multicore Embedded Computing Platforms, 2021

TwinLiverNet: Predicting TACE Treatment Outcome from CT scans for Hepatocellular Carcinoma using Deep Capsule Networks.
Proceedings of the 43rd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2021



2020
Challenging the abstraction penalty in parallel patterns libraries.
J. Supercomput., 2020

Programming languages for data-Intensive HPC applications: A systematic mapping study.
Parallel Comput., 2020

Data stream processing in HPC systems: New frameworks and architectures for high-frequency streaming.
Parallel Comput., 2020

Enforcing Deadlines for Skeleton-based Parallel Programming.
Proceedings of the IEEE Real-Time and Embedded Technology and Applications Symposium, 2020

Practical Parallelization of Scientific Applications.
Proceedings of the 28th Euromicro International Conference on Parallel, 2020

2019
Why High-Performance Modelling and Simulation for Big Data Applications Matters.
Proceedings of the High-Performance Modelling and Simulation for Big Data Applications, 2019

Languages for Big Data analysis.
Proceedings of the Encyclopedia of Big Data Technologies., 2019

On dynamic memory allocation in sliding-window parallel patterns for streaming analytics.
J. Supercomput., 2019

Exploiting Docker containers over Grid computing for a comprehensive study of chromatin conformation in different cell types.
J. Parallel Distributed Comput., 2019

The RePhrase Extended Pattern Set for Data Intensive Parallel Computing.
Int. J. Parallel Program., 2019

Power-aware pipelining with automatic concurrency control.
Concurr. Comput. Pract. Exp., 2019

Deep Learning at Scale.
Proceedings of the 27th Euromicro International Conference on Parallel, 2019

Accelerating Spectral Graph Analysis Through Wavefronts of Linear Algebra Operations.
Proceedings of the 27th Euromicro International Conference on Parallel, 2019

NeoHiC: A Web Application for the Analysis of Hi-C Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019

2018
A parallel pattern for iterative stencil + reduce.
J. Supercomput., 2018

Harnessing sliding-window execution semantics for parallel stream processing.
J. Parallel Distributed Comput., 2018

Guest Editorial for Programming Models and Algorithms for Data Analysis in HPC Systems.
Int. J. Parallel Program., 2018

PiCo: High-performance data analytics pipelines in modern C++.
Future Gener. Comput. Syst., 2018

Pushing the boundaries of parallel Deep Learning - A practical approach.
CoRR, 2018

Scaling Dense Linear Algebra on Multicore and Beyond: A Survey.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018


2017
A Comparison of Big Data Frameworks on a Layered Dataflow Model.
Parallel Process. Lett., 2017

Deep learning for automated skeletal bone age assessment in X-ray images.
Medical Image Anal., 2017

NuChart-II: The road to a fast and scalable tool for Hi-C data analysis.
Int. J. High Perform. Comput. Appl., 2017

OCCAM: a flexible, multi-purpose and extendable HPC cluster.
CoRR, 2017

A Formal Semantics for Data Analytics Pipelines.
CoRR, 2017

Multiple back-end support for the armadillo linear algebra interface.
Proceedings of the Symposium on Applied Computing, 2017

Scientific Workflows on Clouds with Heterogeneous and Preemptible Instances.
Proceedings of the Parallel Computing is Everywhere, 2017

PiCo: A Novel Approach to Stream Data Analytics.
Proceedings of the Euro-Par 2017: Parallel Processing Workshops, 2017

2016
Pool Evolution: A Parallel Pattern for Evolutionary and Symbolic Computing.
Int. J. Parallel Program., 2016

PWHATSHAP: efficient haplotyping for future generation sequencing.
BMC Bioinform., 2016

RPL: A Domain-Specific Language for Designing and Implementing Parallel C++ Applications.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

A Cluster-as-Accelerator Approach for SPMD-Free Data Parallelism.
Proceedings of the 24th Euromicro International Conference on Parallel, 2016

2015
Parallel visual data restoration on multi-GPGPUs using stencil-reduce pattern.
Int. J. High Perform. Comput. Appl., 2015

The Loop-of-Stencil-Reduce Paradigm.
Proceedings of the 2015 IEEE TrustCom/BigDataSE/ISPA, 2015

Parallel Exploration of the Nuclear Chromosome Conformation with NuChart-II.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

Memory-Optimised Parallel Processing of Hi-C Data.
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015

NuchaRt: Embedding High-Level Parallel Computing in R for Augmented Hi-C Data Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014
Design patterns percolating to parallel programming framework implementation.
Int. J. Parallel Program., 2014

Discovering biological knowledge by integrating high-throughput data and scientific literature on the cloud.
Concurr. Comput. Pract. Exp., 2014

Decision tree building on multi-core using FastFlow.
Concurr. Comput. Pract. Exp., 2014

Parallel stochastic systems biology in the cloud.
Briefings Bioinform., 2014

Exercising High-Level Parallel Programming on Streams: A Systems Biology Use Case.
Proceedings of the 34th International Conference on Distributed Computing Systems Workshops (ICDCS 2014 Workshops), Madrid, Spain, June 30, 2014

NuChart-II: A Graph-Based Approach for Analysis and Interpretation of Hi-C Data.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

High-Performance Haplotype Assembly.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014

2013
Parallel Stochastic Simulators in System Biology: The Evolution of the Species.
Proceedings of the 21st Euromicro International Conference on Parallel, 2013

2012
Targeting Heterogeneous Architectures via Macro Data Flow.
Parallel Process. Lett., 2012

Process-driven biometric identification by means of autonomic grid components.
Int. J. Auton. Adapt. Commun. Syst., 2012

FastFlow tutorial
CoRR, 2012

Parallel Patterns + Macro Data Flow for Multi-core Programming.
Proceedings of the 20th Euromicro International Conference on Parallel, 2012

A parallel edge preserving algorithm for salt and pepper image denoising.
Proceedings of the 3rd International Conference on Image Processing Theory Tools and Applications, 2012

An Efficient Unbounded Lock-Free Queue for Multi-core Systems.
Proceedings of the Euro-Par 2012 Parallel Processing - 18th International Conference, 2012

Structured Data Access Annotations for Massively Parallel Computations.
Proceedings of the Euro-Par 2012: Parallel Processing Workshops, 2012

Targeting Distributed Systems in FastFlow.
Proceedings of the Euro-Par 2012: Parallel Processing Workshops, 2012

2011
On Designing Multicore-Aware Simulators for Biological Systems.
Proceedings of the 19th International Euromicro Conference on Parallel, 2011

The ParaPhrase Project: Parallel Patterns for Adaptive Heterogeneous Multicore Systems.
Proceedings of the Formal Methods for Components and Objects, 10th International Symposium, 2011

Managing Adaptivity in Parallel Systems.
Proceedings of the Formal Methods for Components and Objects, 10th International Symposium, 2011

An Abstract Annotation Model for Skeletons.
Proceedings of the Formal Methods for Components and Objects, 10th International Symposium, 2011

Accelerating Code on Multi-cores with FastFlow.
Proceedings of the Euro-Par 2011 Parallel Processing - 17th International Conference, 2011

On Parallelizing On-Line Statistics for Stochastic Biological Simulations.
Proceedings of the Euro-Par 2011: Parallel Processing Workshops - CCPI, CGWS, HeteroPar, HiBB, HPCVirt, HPPC, HPSS, MDGS, ProPer, Resilience, UCHPC, VHPC, Bordeaux, France, August 29, 2011

2010
Formal Synthetic Immunology.
ERCIM News, 2010

Accelerating sequential programs using FastFlow and self-offloading
CoRR, 2010

Toward a Formal Semantics for Autonomic Components
CoRR, 2010

Porting Decision Tree Algorithms to Multicore Using FastFlow.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2010

Efficient Smith-Waterman on Multi-core with FastFlow.
Proceedings of the 18th Euromicro Conference on Parallel, 2010

LIBERO: A Framework for Autonomic Management of Multiple Non-functional Concerns.
Proceedings of the Euro-Par 2010 Parallel Processing Workshops, 2010

StochKit-FF: Efficient Systems Biology on Multicore Architectures.
Proceedings of the Euro-Par 2010 Parallel Processing Workshops, 2010

2009
FastFlow: Efficient Parallel Streaming Applications on Multi-core
CoRR, 2009

Towards Hierarchical Management of Autonomic Components: A Case Study.
Proceedings of the 17th Euromicro International Conference on Parallel, 2009

Efficient streaming applications on multi-core with FastFlow: the biosequence alignment test-bed.
Proceedings of the Parallel Computing: From Multicores and GPU's to Petascale, 2009

Skeletons for multi/many-core systems.
Proceedings of the Parallel Computing: From Multicores and GPU's to Petascale, 2009

Autonomic management of non-functional concerns in distributed & parallel application programming.
Proceedings of the 23rd IEEE International Symposium on Parallel and Distributed Processing, 2009

Autonomic management of multiple non-functional concerns in behavioural skeletons.
Proceedings of the Grids, 2009

Stkm on Sca: A Unified Framework with Components, Workflows and Algorithmic Skeletons.
Proceedings of the Euro-Par 2009 Parallel Processing, 2009

Integrating Autonomic Grid Components and Process-Driven Business Applications.
Proceedings of the Autonomic Computing and Communications Systems, 2009

2008
Automatic Mapping of Assist Applications Using Process Algebra.
Parallel Process. Lett., 2008

Securing skeletal systems with limited performance penalty: The muskel.
J. Syst. Archit., 2008

The VirtuaLinux Storage Abstraction Layer for Ef?cient Virtual Clustering.
Proceedings of the 16th Euromicro International Conference on Parallel, 2008

Behavioural Skeletons in GCM: Autonomic Management of Grid Components.
Proceedings of the 16th Euromicro International Conference on Parallel, 2008

Semi-formal Models to Support Program Development: Autonomic Management within Component Based Parallel and Distributed Programming.
Proceedings of the Formal Methods for Components and Objects, 7th International Symposium, 2008

Co-design of Distributed Systems Using Skeleton and Autonomic Management Abstractions.
Proceedings of the Euro-Par 2008 Workshops, 2008

From Orc Models To Distributed Grid Java Code.
Proceedings of the Grid Computing, 2008

2007
MUSKEL: an expandable skeleton environment.
Scalable Comput. Pract. Exp., 2007

Skeleton-based parallel programming: Functional and parallel semantics in a single shot.
Comput. Lang. Syst. Struct., 2007

The cost of security in skeletal systems.
Proceedings of the 15th Euromicro International Conference on Parallel, 2007

VirtuaLinux: Virtualized High-Density Clusters with no Single Point of Failure.
Proceedings of the Parallel Computing: Architectures, 2007

A Framework for Prototyping and Reasoning about Distributed Systems.
Proceedings of the Parallel Computing: Architectures, 2007

Management in Distributed Systems: A Semi-formal Approach.
Proceedings of the Euro-Par 2007, 2007

Adding metadata to Orc to support reasoning about grid programs.
Proceedings of the Towards Next Generation Grids, 2007

Behavioural Skeletons for Component Autonomic Management on Grids.
Proceedings of the Making Grids Work: Proceedings of the CoreGRID Workshop on Programming Models Grid and P2P System Architecture Grid Systems, 2007

2006
Algorithmic skeletons meeting grids.
Parallel Comput., 2006

Autonomic QoS in ASSIST Grid-Aware Components.
Proceedings of the 14th Euromicro International Conference on Parallel, 2006

Fault-Tolerant Data Sharing for High-level Grid: A Hierarchical Storage Architecture.
Proceedings of the Achievements in European Research on Grid Systems: CoreGRID Integration Workshop 2006, 2006

ASSIST As a Research Framework for High-Performance Grid Programming Environments.
Proceedings of the Grid Computing: Software Environments and Tools, 2006

2005
Building Interoperable Grid-aware ASSIST Applications via WebServices.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

Towards a Distributed Scalable Data Service for the Grid.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

Parallel Program/Component Adaptivity Management.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

Dynamic Reconfiguration of Grid-Aware Applications in ASSIST.
Proceedings of the Euro-Par 2005, Parallel Processing, 11th International Euro-Par Conference, Lisbon, Portugal, August 30, 2005

2004
Optimization techniques for skeletons on grids.
Proceedings of the Grid Computing: The New Frontier of High Performance Computing [post-proceedings of the High Performance Computing Workshop, 2004

Topic 8: Parallel Computer Architecture and Instruction-Level Parallelism.
Proceedings of the Euro-Par 2004 Parallel Processing, 2004

Accelerating Apache Farms Through Ad-HOC Distributed Scalable Object Repository.
Proceedings of the Euro-Par 2004 Parallel Processing, 2004

Targeting Heterogeneous Architectures in ASSIST: Experimental Results.
Proceedings of the Euro-Par 2004 Parallel Processing, 2004

Structured Implementation of Component-Based Grid Programming Environments.
Proceedings of the Future Generation Grids: Proceedings of the Workshop on Future Generation Grids, 2004

2003
eskimo: Experimenting with Skeletons in the Shared Address Model.
Parallel Process. Lett., 2003

An advanced environment supporting structured parallel programming in Java.
Future Gener. Comput. Syst., 2003

An operational semantics for skeletons.
Proceedings of the Parallel Computing: Software Technology, 2003

A framework for experimenting with structure parallel programming environment design.
Proceedings of the Parallel Computing: Software Technology, 2003

The Implementation of ASSIST, an Environment for Parallel and Distributed Programming.
Proceedings of the Euro-Par 2003. Parallel Processing, 2003

ASSIST Demo: A High Level, High Performance Portable, Structured Parallel Programming Environment at Work.
Proceedings of the Euro-Par 2003. Parallel Processing, 2003

2001
Towards parallel programming by transformation: the FAN skeleton framework.
Parallel Algorithms Appl., 2001


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