Jan Byska

According to our database, Jan Byska authored at least 32 papers between 2013 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

InVADo: Interactive Visual Analysis of Molecular Docking Data.

Marco Schäfer, Nicolas Brich, Jan Byska, Sérgio M. Marques, David Bednár, Philipp Thiel, Barbora Kozlíková, Michael Krone

IEEE Trans. Vis. Comput. Graph., April, 2024

2023

State of the Art of Molecular Visualization in Immersive Virtual Environments.

David Kuták, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byska, Barbora Kozlíková, Haichao Miao

Comput. Graph. Forum, September, 2023

xOpat: eXplainable Open Pathology Analysis Tool.

Jirí Horák, Katarína Furmanová, Barbora Kozlíková, Tomás Brázdil, Petr Holub, M. Kacenga, Matej Gallo, R. Nenutil, Jan Byska, Vít Rusnák

Comput. Graph. Forum, June, 2023

Foreword: Special section on Molecular Graphics and Visual Analysis of Molecular Data (MolVA 2023).

Jan Byska, Michael Krone, Björn Sommer

Comput. Graph., May, 2023

sMolBoxes: Dataflow Model for Molecular Dynamics Exploration.

Pavol Ulbrich, Manuela Waldner, Katarína Furmanová, Sérgio M. Marques, David Bednár, Barbora Kozlíková, Jan Byska

IEEE Trans. Vis. Comput. Graph., 2023

2022

Vivern-A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures.

David Kuták, Matias Nicolás Selzer, Jan Byska, Maria Luján Ganuza, Ivan Barisic, Barbora Kozlíková, Haichao Miao

IEEE Trans. Vis. Comput. Graph., 2022

LoopGrafter: a web tool for transplanting dynamical loops for protein engineering.

Joan Planas-Iglesias, Filip Opálený, Pavol Ulbrich, Jan Stourac, Zainab K. Sanusi, Gaspar R. P. Pinto, Andrea Schenkmayerova, Jan Byska, Jirí Damborský, Barbora Kozlíková, David Bednar

Nucleic Acids Res., 2022

ChromoSkein: Untangling Three-Dimensional Chromatin Fiber With a Web-Based Visualization Framework.

Matús Talcík, Filip Opálený, Tereza Clarence, Katarína Furmanová, Jan Byska, Barbora Kozlíková, David Kouril

CoRR, 2022

2021

ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening.

María Virginia Sabando, Pavol Ulbrich, Matias Nicolás Selzer, Jan Byska, Jan Mican, Ignacio Ponzoni, Axel J. Soto, Maria Luján Ganuza, Barbora Kozlíková

IEEE Trans. Vis. Comput. Graph., 2021

Foreword to the special section on molecular graphics and visual analysis of molecular data (MolVA 2021).

Jan Byska, Michael Krone, Bjorn Sommer

Comput. Graph., 2021

VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality.

Vojtech Bruza, Jan Byska, Jan Mican, Barbora Kozlíková

Comput. Graph., 2021

2020

Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool.

Jan Byska, Adam Jurcík, Katarína Furmanová, Barbora Kozlíková, Jan J. Palecek

Proceedings of the Protein-Protein Interaction Networks, Methods and Protocols., 2020

Scale-Space Splatting: Reforming Spacetime for Cross-Scale Exploration of Integral Measures in Molecular Dynamics.

Juraj Pálenik, Jan Byska, Stefan Bruckner, Helwig Hauser

IEEE Trans. Vis. Comput. Graph., 2020

Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes.

Katarína Furmanová, Adam Jurcík, Barbora Kozlíková, Helwig Hauser, Jan Byska

IEEE Trans. Vis. Comput. Graph., 2020

DockVis: Visual Analysis of Molecular Docking Trajectories.

Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský, Vojtech Vonásek, David Bednar, Jan Byska

Comput. Graph. Forum, 2020

Visual exploration of large normal mode spaces to study protein flexibility.

Pierre Bedoucha, Nathalie Reuter, Helwig Hauser, Jan Byska

Comput. Graph., 2020

PINGU Principles of Interactive Navigation for Geospatial Understanding.

Zoltán Orémus, Kahin Akram Hassan, Jirí Chmelík, Michaela Knazková, Jan Byska, Renata Georgia Raidou, Barbora Kozlíková

Proceedings of the 2020 IEEE Pacific Visualization Symposium, 2020

2019

Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization.

Jan Byska, Thomas Trautner, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková, Manuela Waldner

Comput. Graph. Forum, 2019

DockVis: Visual Analysis of Molecular Docking Data.

Katarína Furmanová, Barbora Kozlíková, Vojtech Vonásek, Jan Byska

Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine, 2019

Visual Analysis of Ligand Trajectories in Molecular Dynamics.

Adam Jurcík, Katarína Furmanová, Jan Byska, Vojtech Vonásek, Ondrej Vávra, Pavol Ulbrich, Helwig Hauser, Barbora Kozlíková

Proceedings of the IEEE Pacific Visualization Symposium, 2019

2018

COZOID: contact zone identifier for visual analysis of protein-protein interactions.

Katarína Furmanová, Jan Byska, M. Eduard Gröller, Ivan Viola, Jan J. Palecek, Barbora Kozlíková

BMC Bioinform., 2018

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories.

Adam Jurcík, David Bednar, Jan Byska, Sérgio M. Marques, Katarína Furmanová, Lukas Daniel, Piia Kokkonen, Jan Brezovsky, Ondrej Strnad, Jan Stourac, Antonín Pavelka, Martin Manak, Jirí Damborský, Barbora Kozlíková

Bioinform., 2018

2017

Comparative visualization of protein secondary structures.

Lucia Kocincová, Miroslava Jaresová, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková

BMC Bioinform., 2017

Interactive exploration of ligand transportation through protein tunnels.

Katarína Furmanová, Miroslava Jaresová, Jan Byska, Adam Jurcík, Július Parulek, Helwig Hauser, Barbora Kozlíková

BMC Bioinform., 2017

Watergate: Visual Exploration of Water Trajectories in Protein Dynamics.

Viktor Vad, Jan Byska, Adam Jurcík, Ivan Viola, M. Eduard Gröller, Helwig Hauser, Sérgio M. Marques, Jirí Damborský, Barbora Kozlíková

Proceedings of the VCBM 17: Eurographics Workshop on Visual Computing for Biology and Medicine, 2017

2016

AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics.

Jan Byska, Mathieu Le Muzic, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková

IEEE Trans. Vis. Comput. Graph., 2016

Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics.

Ivan Kolesár, Jan Byska, Július Parulek, Helwig Hauser, Barbora Kozlíková

Proceedings of the 6th Eurographics Workshop on Visual Computing for Biology and Medicine, 2016

2015

MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids.

Jan Byska, Adam Jurcík, M. Eduard Gröller, Ivan Viola, Barbora Kozlíková

Comput. Graph. Forum, 2015

Visibility-based approach to surface detection of tunnels in proteins.

Adam Jurcík, Jan Byska, Jirí Sochor, Barbora Kozlíková

Proceedings of the 31st Spring Conference on Computer Graphics, 2015

Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks.

Jan Byska, Ivana Kolingerová, Barbora Kozlíková, Jirí Sochor

Proceedings of the 31st Spring Conference on Computer Graphics, 2015

2014

Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations.

Barbora Kozlíková, Adam Jurcík, Jan Byska, Ondrej Strnad, Jiri Sochor

Proceedings of the Eurographics Workshop on Visual Computing for Biology and Medicine, 2014

2013

Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules.

Jan Byska, Adam Jurcík, Jiri Sochor

Proceedings of the Theory and Practice of Computer Graphics, 2013