Sergey Knyazev

According to our database, Sergey Knyazev authored at least 14 papers between 2014 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

MicrobeTrace: Retooling molecular epidemiology for rapid public health response.

Ellsworth M. Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, Sergey Knyazev, Roxana Cintron, William M. Switzer

PLoS Comput. Biol., 2021

Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.

Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky

J. Comput. Biol., 2021

Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations.

Daniel Novikov, Sergey Knyazev, Mark Grinshpon, Pelin B. Icer, Pavel Skums, Alex Zelikovsky

J. Comput. Biol., 2021

From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering.

Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson

J. Comput. Biol., 2021

Epidemiological data analysis of viral quasispecies in the next-generation sequencing era.

Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky

Briefings Bioinform., 2021

A Novel Network Representation of SARS-CoV-2 Sequencing Data.

Sergey Knyazev, Daniel Novikov, Mark Grinshpon, Harman Singh, Ram Ayyala, Varuni Sarwal, Roya Hosseini, Pelin Icer Baykal, Pavel Skums, Ellsworth Campbell, Serghei Mangul, Alex Zelikovsky

Proceedings of the Bioinformatics Research and Applications - 17th International Symposium, 2021

2020

Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data.

Filipp Rondel, Akram Sadat Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky

Proceedings of the Bioinformatics Research and Applications - 16th International Symposium, 2020

Clustering Based Identification of SARS-CoV-2 Subtypes.

Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson

Proceedings of the Computational Advances in Bio and Medical Sciences, 2020

Benchmarking of computational error-correction methods for next-generation sequencing data.

Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina Gerasimov, Russell Littman, Brian L. Hill, Nicholas C. Wu, Harry (Taegyun) Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alex Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul

Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020

2018

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data.

Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov

Bioinform., 2018

Repeat-aware evaluation of scaffolding tools.

Igor Mandric, Sergey Knyazev, Alex Zelikovsky

Bioinform., 2018

2017

Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities.

Igor Mandric, Sergey Knyazev, Cory Padilla, Frank Stewart, Ion I. Mandoiu, Alex Zelikovsky

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

2014

Coarse-grained model of protein interaction for bio-inspired nano-communication.

Sergey Knyazev, Sergey Tarakanov, Vladimir Kuznetsov, Yuri Porozov, Yevgeni Koucheryavy, Eugene O. Stepanov

Proceedings of the 6th International Congress on Ultra Modern Telecommunications and Control Systems and Workshops, 2014

Protein Conformation Motion Modeling Using Sep-CMA-ES.

Maxim Buzdalov, Sergey Knyazev, Yuri Porozov

Proceedings of the 13th International Conference on Machine Learning and Applications, 2014