Deok-Soo Kim

According to our database1, Deok-Soo Kim authored at least 112 papers between 1993 and 2020.

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Bibliography

2020
Beta-complex versus Alpha-complex: Similarities and Dissimilarities.
IEEE Trans. Vis. Comput. Graph., 2020

MGOS: A library for molecular geometry and its operating system.
Comput. Phys. Commun., 2020

VOROPACK-D: Real-time disk packing algorithm using Voronoi diagram.
Appl. Math. Comput., 2020

2019
QuickhullDisk: A faster convex hull algorithm for disks.
Appl. Math. Comput., 2019

2018
Support-free hollowing for 3D printing via Voronoi diagram of ellipses.
Comput. Aided Des., 2018

2017
Fused Segmentation of Geometric Models for Myocardium and Coronary Artery via Medial Axis.
CoRR, 2017

Support-Free Hollowing for 3D Printing via Voronoi Diagram of Ellipses.
CoRR, 2017

2016
A Robust Divide and Conquer Algorithm for Progressive Medial Axes of Planar Shapes.
IEEE Trans. Vis. Comput. Graph., 2016

Topology-Oriented Incremental Algorithm for the Robust Construction of the Voronoi Diagrams of Disks.
ACM Trans. Math. Softw., 2016

BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization.
Nucleic Acids Res., 2016

Robust Construction of the Additively-Weighted Voronoi Diagram via Topology-Oriented Incremental Algorithm.
Proceedings of the Mathematical Software - ICMS 2016, 2016

A Stabilization Model for E-Government Innovation.
Proceedings of the 49th Hawaii International Conference on System Sciences, 2016

2015
BetaCavityWeb: a webserver for molecular voids and channels.
Nucleic Acids Res., 2015

2014
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex.
Trans. Comput. Sci., 2014

Voronoi diagrams, quasi-triangulations, and beta-complexes for disks in R<sup>2</sup>: the theory and implementation in BetaConcept.
J. Comput. Des. Eng., 2014

BetaSCP2: A Program for the Optimal Prediction of Side-Chains in Proteins.
Proceedings of the Mathematical Software - ICMS 2014, 2014

BULL! - The Molecular Geometry Engine Based on Voronoi Diagram, Quasi-Triangulation, and Beta-Complex.
Proceedings of the Mathematical Software - ICMS 2014, 2014

BetaConcept: A Program for Voronoi Diagrams, Dual Structures, and Complexes in the Plane.
Proceedings of the 2014 14th International Conference on Computational Science and Its Applications, Guimaraes, Portugal, June 30, 2014

How Similar Are Quasi-, Regular, and Delaunay Triangulations in ℝ3?
Proceedings of the Computational Science and Its Applications - ICCSA 2014 - 14th International Conference, Guimarães, Portugal, June 30, 2014

Molecular Geometry and BULL!
Proceedings of the 2014 International Conference on Cyberworlds, 2014

The Duality of Geodesic Voronoi/Delaunay Diagrams For An Intrinsic Discrete Laplace-Beltrami Operator on Simplicial Surfaces.
Proceedings of the 26th Canadian Conference on Computational Geometry, 2014

2013
Tunnels and Voids in Molecules via Voronoi Diagrams and Beta-Complexes.
Trans. Comput. Sci., 2013

Protein structure optimization by side-chain positioning via beta-complex.
J. Glob. Optim., 2013

GalaxyDock2: Protein-ligand docking using beta-complex and global optimization.
J. Comput. Chem., 2013

Anomalies in quasi-triangulations and beta-complexes of spherical atoms in molecules.
Comput. Aided Des., 2013

Anomaly Occurrences in Quasi-triangulations and Beta-complexes.
Proceedings of the 10th International Symposium on Voronoi Diagrams in Science and Engineering, 2013

Molecular Geometry: A New Challenge and Opportunity for Geometers.
Proceedings of the 10th International Symposium on Voronoi Diagrams in Science and Engineering, 2013

2012
Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets.
J. Comput. Chem., 2012

Querying simplexes in quasi-triangulation.
Comput. Aided Des., 2012

QTF: Quasi-triangulation file format.
Comput. Aided Des., 2012

Tunnels and Voids in Molecules via Voronoi Diagram.
Proceedings of the Ninth International Symposium on Voronoi Diagrams in Science and Engineering, 2012

2011
A 1.0-4.0-Gb/s All-Digital CDR With 1.0-ps Period Resolution DCO and Adaptive Proportional Gain Control.
IEEE J. Solid State Circuits, 2011

BetaMol: Molecular Modeling, Analysis, and Visualization Software Based on the Beta-Complex Derived from the Voronoi Diagram.
Proceedings of the Eighth International Symposium on Voronoi Diagrams in Science and Engineering, 2011

2010
Protein-Ligand Docking Based on Beta-Shape.
Trans. Comput. Sci., 2010

A 0.3-1.4 GHz All-Digital Fractional-N PLL With Adaptive Loop Gain Controller.
IEEE J. Solid State Circuits, 2010

Manifoldization of beta-shapes in O(n) time.
Comput. Aided Des., 2010

Three-dimensional beta-shapes and beta-complexes via quasi-triangulation.
Comput. Aided Des., 2010

Quasi-worlds and quasi-operators on quasi-triangulations.
Comput. Aided Des., 2010

Topologies of surfaces on molecules and their computation in O(n) time.
Comput. Aided Des., 2010

Searching Simplexes in Quasi-triangulation.
Proceedings of the Seventh International Symposium on Voronoi Diagrams in Science and Engineering, 2010

2009
Guest Editor's Foreword.
Int. J. Comput. Geom. Appl., 2009

Triangulation of molecular surfaces.
Comput. Aided Des., 2009

New trends in Voronoi diagrams for CAD/CAM/CAE.
Comput. Aided Des., 2009

Protein-Ligand Docking Based on ss-shape.
Proceedings of the Sixth International Symposium on Voronoi Diagrams, 2009

A Single Beta-Complex Solves All Geometry Problems in a Molecule.
Proceedings of the Sixth International Symposium on Voronoi Diagrams, 2009

2008
The beta-Shape and beta-Complex for Analysis of Molecular Structures.
Proceedings of the Generalized Voronoi Diagram: A Geometry-Based Approach to Computational Intelligence, 2008

Guest Editors' Foreword.
Int. J. Comput. Geom. Appl., 2008

Voronoi Diagram of a Polygon in chessboard Metric and Maskless lithographic Applications.
Int. J. Comput. Geom. Appl., 2008

Trash removal algorithm for fast construction of the elliptic Gabriel graph using Delaunay triangulation.
Comput. Aided Des., 2008

Manifoldization of pi-Shapes by Topology Operators.
Proceedings of the Advances in Geometric Modeling and Processing, 2008

2007
Upper and lower bounds of op-code probabilities for Edgebreaker.
Int. J. Comput. Sci. Eng., 2007

Analytic and discrete fairing of three-dimensional B-spline curves using nonlinear programming.
Comput. Ind. Eng., 2007

Molecular surfaces on proteins via beta shapes.
Comput. Aided Des., 2007

An efficient algorithm for three-dimensional beta-complex and beta-shape via a quasi-triangulation.
Proceedings of the 2007 ACM Symposium on Solid and Physical Modeling, 2007

beta-shape Based Computation of Blending Surfaces on a Molecule.
Proceedings of the 4th International Symposium on Voronoi Diagrams in Science and Engineering, 2007

A 2.8Gb/s All-Digital CDR with a 10b Monotonic DCO.
Proceedings of the 2007 IEEE International Solid-State Circuits Conference, 2007

Real-Time Triangulation of Molecular Surfaces.
Proceedings of the Computational Science and Its Applications, 2007

A Tabu Search Algorithm using the Voronoi Diagram for the Capacitated Vehicle Routing Problem.
Proceedings of the Selected Papers of the Fifth International Conference on, 2007

Multi-Resolution Protein Model.
Proceedings of the Computational Science and Its Applications, 2007

2006
Guest editorial.
Vis. Comput., 2006

Connolly Surface on an Atomic Structure via Voronoi Diagram of Atoms.
J. Comput. Sci. Technol., 2006

Interaction interfaces in proteins via the Voronoi diagram of atoms.
Comput. Aided Des., 2006

Three-dimensional beta shapes.
Comput. Aided Des., 2006

Apollonius tenth problem via radius adjustment and Möbius transformations.
Comput. Aided Des., 2006

Quasi-triangulation and interworld data structure in three dimensions.
Comput. Aided Des., 2006

Region-expansion for the Voronoi diagram of 3D spheres.
Comput. Aided Des., 2006

Recognition of docking sites on a protein using <i>beta</i>-shape based on Voronoi diagram of atoms.
Comput. Aided Des., 2006

A sweepline algorithm for Euclidean Voronoi diagram of circles.
Comput. Aided Des., 2006

The B-shape and B-complex for three-dimensional spheres.
Proceedings of the 3rd International Symposium on Voronoi Diagrams in Science and Engineering, 2006

A <i>beta</i>-Shape from the Voronoi Diagram of Atoms for Protein Structure Analysis.
Proceedings of the Computational Science and Its Applications, 2006

Efficient Computation of Elliptic Gabriel Graph.
Proceedings of the Computational Science and Its Applications, 2006

Reduction of the Search Space in the Edge-Tracing Algorithm for the Voronoi Diagram of 3D Balls.
Proceedings of the Computational Science and Its Applications, 2006

2005
Euclidean voronoi diagram for circles in a circle.
Int. J. Comput. Geom. Appl., 2005

Euclidean Voronoi diagram of 3D balls and its computation via tracing edges.
Comput. Aided Des., 2005

A protein domain interaction interface database: InterPare.
BMC Bioinform., 2005

Euclidean Voronoi Diagrams of 3D Spheres: Their Construction and Related Problems from Biochemistry.
Proceedings of the Mathematics of Surfaces XI, 2005

Regrouping Service Sites: A Genetic Approach Using a Voronoi Diagram.
Proceedings of the Computational Science and Its Applications, 2005

Triangular Prism Generation Algorithm for Polyhedron Decomposition.
Proceedings of the Computational Science and Its Applications, 2005

Visualization and Analysis of Protein Structures Using Euclidean Voronoi Diagram of Atoms.
Proceedings of the Computational Science and Its Applications, 2005

Region Expansion by Flipping Edges for Euclidean Voronoi Diagrams of 3D Spheres Based on a Radial Data Structure.
Proceedings of the Computational Science and Its Applications, 2005

Pocket Recognition on a Protein Using Euclidean Voronoi Diagram of Atoms.
Proceedings of the Computational Science and Its Applications, 2005

2004
Normal vector compression of 3D mesh model based on clustering and relative indexing.
Future Gener. Comput. Syst., 2004

Optimal Direction for Monotone Chain Decomposition.
Proceedings of the Computational Science and Its Applications, 2004

Polyhedron Splitting Algorithm for 3D Layer Generation.
Proceedings of the Computational Science and Its Applications, 2004

Shortest Paths for Disc Obstacles.
Proceedings of the Computational Science and Its Applications, 2004

Plane-Sweep Algorithm of O(nlogn) for the Inclusion Hierarchy among Circles.
Proceedings of the Computational Science and Its Applications, 2004

Probability Distribution of Op-Codes in Edgebreaker.
Proceedings of the Computational Science and Its Applications, 2004

Edge-tracing algorithm for euclidean voronoi diagram of 3d spheres.
Proceedings of the 16th Canadian Conference on Computational Geometry, 2004

2003
Determination of Cutting Direction for Minimization of Tool Retraction Length in Zigzag Pocket Machining.
Proceedings of the Computational Science and Its Applications, 2003

Voronoi Diagram of Circles in a Large Circle.
Proceedings of the Computational Science and Its Applications, 2003

Distribution of Vertex Indices in Edgebreaker.
Proceedings of the Computational Science and Its Applications, 2003

Probability Distribution of Index Distances in Normal Index Array for Normal Vector Compression.
Proceedings of the Computational Science - ICCS 2003, 2003

2002
The conversion of a dynamic B-spline curve into piecewise polynomials in power form.
Comput. Aided Des., 2002

Normal Compression Based on Clustering and Relative Indexing.
Proceedings of the 10th Pacific Conference on Computer Graphics and Applications, 2002

Transformation of a Dynamic B-Spline Curve into Piecewise Power Basis Representation.
Proceedings of the Computational Science - ICCS 2002, 2002

The Compression of the Normal Vectors of 3D Mesh Models Using Clustering.
Proceedings of the Computational Science - ICCS 2002, 2002

2001
Voronoi diagram of a circle set from Voronoi diagram of a point set: II. Geometry.
Comput. Aided Geom. Des., 2001

Voronoi diagram of a circle set from Voronoi diagram of a point set: I. Topology.
Comput. Aided Geom. Des., 2001

Rational Bézier form of hodographs of rational Bézier curves and surfaces.
Comput. Aided Des., 2001

Surface slicing algorithm based on topology transition.
Comput. Aided Des., 2001

The computation of circumcircles of three circles.
Proceedings of the Sixth ACM Symposium on Solid Modeling and Applications, 2001

Geometry Compression Based on Mantissa Chunking of Vertices.
Proceedings of the International Conference on Information Visualisation, 2001

Apollonius Tenth Problem as a Point Location Problem.
Proceedings of the Computational Science - ICCS 2001, 2001

Robust and Fast Algorithm for a Circle Set Voronoi Diagram in a Plane.
Proceedings of the Computational Science - ICCS 2001, 2001

2000
Voronoi Diagram of a Circle Set Constructed from Voronoi Diagram of a Point Set.
Proceedings of the Algorithms and Computation, 11th International Conference, 2000

Fast Conversion of Dynamic B-Spline Curves into a Set of Power Form Polynomial Curves.
Proceedings of the Geometric Modeling and Processing 2000, 2000

1998
A cocktail algorithm for planar bézier curve intersections.
Comput. Aided Des., 1998

Polygon offsetting using a Voronoi diagram and two stacks.
Comput. Aided Des., 1998

1995
Tangent, normal, and visibility cones on Bézier surfaces.
Comput. Aided Geom. Des., 1995

Detection of degenerate normal vectors on parametric surfaces: Tangent cone approach.
Comput. Aided Geom. Des., 1995

Representing the Voronoi diagram of a simple polygon using rational quadratic Bézier curves.
Comput. Aided Des., 1995

1993
Hodograph approach to geometric characterization of parametric cubic curves.
Comput. Aided Des., 1993


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