Fabio Pardi

According to our database, Fabio Pardi authored at least 21 papers between 2002 and 2025.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of two.

2025

Algorithms to reconstruct past indels: The deletion-only parsimony problem.

Jordan Moutet, Eric Rivals, Fabio Pardi

PLoS Comput. Biol., 2025

2023

EPIK: precise and scalable evolutionary placement with informative <i>k</i>-mers.

Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals

Bioinform., December, 2023

Computing Phylo-$k$k-Mers.

Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2021

On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo.

Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca

PLoS Comput. Biol., 2021

A phylogenetic approach for weighting genetic sequences.

Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman

BMC Bioinform., 2021

Rapid screening and detection of inter-type viral recombinants using phylo-k-mers.

Guillaume E. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi

Bioinform., 2021

PEWO: a collection of workflows to benchmark phylogenetic placement.

Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals

Bioinform., 2021

2020

Computing the probability of gene trees concordant with the species tree in the multispecies coalescent.

Jakub Truszkowski, Céline Scornavacca, Fabio Pardi

CoRR, 2020

2019

Cutting an alignment with Ockham's razor.

Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca

CoRR, 2019

Rapid alignment-free phylogenetic identification of metagenomic sequences.

Benjamin Linard, Krister M. Swenson, Fabio Pardi

Bioinform., 2019

2017

Rearrangement moves on rooted phylogenetic networks.

Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca

PLoS Comput. Biol., 2017

Finding the most parsimonious or likely tree in a network with respect to an alignment.

Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel

CoRR, 2017

2016

Distance-Based Phylogeny Reconstruction: Safety and Edge Radius.

Olivier Gascuel, Fabio Pardi, Jakub Truszkowski

Encyclopedia of Algorithms, 2016

Do branch lengths help to locate a tree in a phylogenetic network?

Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca

CoRR, 2016

Fast and accurate branch lengths estimation for phylogenomic trees.

Manuel Binet, Olivier Gascuel, Céline Scornavacca, Emmanuel J. P. Douzery, Fabio Pardi

BMC Bioinform., 2016

2015

Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable.

Fabio Pardi, Céline Scornavacca

PLoS Comput. Biol., 2015

2010

Approximate Maximum Parsimony and Ancestral Maximum Likelihood.

Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

2009

Budgeted Phylogenetic Diversity on Circular Split Systems.

Bui Quang Minh, Fabio Pardi, Steffen Klaere, Arndt von Haeseler

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

2008

Determination and validation of principal gene products.

Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia

Bioinform., 2008

2005

GSMA: software implementation of the genome search meta-analysis method.

Fabio Pardi, Douglas F. Levinson, Cathryn M. Lewis

Bioinform., 2005

2002

Category Similarity as a Predictor for SVM Learning Performance.

Fabio Pardi

Proceedings of the Fifteenth International Florida Artificial Intelligence Research Society Conference, 2002