Nick Goldman

According to our database, Nick Goldman authored at least 18 papers between 1996 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets.

Nicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman

PLoS Comput. Biol., 2022

2021

Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk.

Antanas Kalkauskas, Umberto Perron, Yuxuan Sun, Nick Goldman, Guy Baele, Stéphane Guindon, Nicola De Maio

PLoS Comput. Biol., 2021

A phylogenetic approach for weighting genetic sequences.

Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman

BMC Bioinform., 2021

2015

Music of the Spheres.

Charlotte Jarvis, Nick Goldman

Proceedings of the Electronic Visualisation and the Arts, 2015

2014

Phylogenetic Quantification of Intra-tumour Heterogeneity.

Roland F. Schwarz, Anne Trinh, Botond Sipos, James D. Brenton, Nick Goldman, Florian Markowetz

PLoS Comput. Biol., 2014

2013

Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset.

Tjaart A. P. de Beer, Roman A. Laskowski, Sarah L. Parks, Botond Sipos, Nick Goldman, Janet M. Thornton

PLoS Comput. Biol., 2013

Towards practical, high-capacity, low-maintenance information storage in synthesized DNA.

Nick Goldman, Paul Bertone, Siyuan Chen, Christophe Dessimoz, Emily M. LeProust, Botond Sipos, Ewan Birney

Nat., 2013

2012

Error-correcting properties of the SOLiD Exact Call Chemistry.

Tim Massingham, Nick Goldman

BMC Bioinform., 2012

Accurate extension of multiple sequence alignments using a phylogeny-aware graph algorithm.

Ari Löytynoja, Albert J. Vilella, Nick Goldman

Bioinform., 2012

2011

PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.

Botond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman

BMC Bioinform., 2011

2010

webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser.

Ari Löytynoja, Nick Goldman

BMC Bioinform., 2010

Genomic DNA <i>k</i>-mer Spectra: Models and Modalities.

Benny Chor, David Horn, Nick Goldman, Yaron Levy, Tim Massingham

Proceedings of the Research in Computational Molecular Biology, 2010

2008

Determination and validation of principal gene products.

Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia

Bioinform., 2008

2006

PANDIT: an evolution-centric database of protein and associated nucleotide domains with inferred trees.

Simon Whelan, Paul I. W. de Bakker, Emmanuel Quevillon, Nicolas Rodriguez, Nick Goldman

Nucleic Acids Res., 2006

XRate: a fast prototyping, training and annotation tool for phylo-grammars.

Peter S. Klosterman, Andrew V. Uzilov, Yuri R. Bendaña, Robert K. Bradley, Sharon Chao, Carolin Kosiol, Nick Goldman, Ian H. Holmes

BMC Bioinform., 2006

2003

Pandit: a database of protein and associated nucleotide domains with inferred trees.

Simon Whelan, Paul I. W. de Bakker, Nick Goldman

Bioinform., 2003

2000

EDIBLE: experimental design and information calculations in phylogenetics.

Tim Massingham, Nick Goldman

Bioinform., 2000

1996

The Performance of Transversion Based Distance Estimates.

Michael Schöniger, Nick Goldman

Proceedings of the German Conference on Bioinformatics, 1996