Marc A. Suchard

According to our database, Marc A. Suchard authored at least 32 papers between 2005 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

Scalable Bayesian inference for self-excitatory stochastic processes applied to big American gunfire data.

Andrew J. Holbrook, Charles E. Loeffler, Seth R. Flaxman, Marc A. Suchard

Stat. Comput., 2021

Erratum to: Large-Scale Evidence Generation and Evaluation across a Network of Databases (LEGEND): Assessing Validity Using Hypertension as a Case Study.

Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard

J. Am. Medical Informatics Assoc., 2021

A phylogenetic approach for weighting genetic sequences.

Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman

BMC Bioinform., 2021

2020

Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND).

Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard

J. Am. Medical Informatics Assoc., 2020

Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study.

Martijn J. Schuemie, Patrick B. Ryan, Nicole Pratt, Ruijun Chen, Seng Chan You, Harlan M. Krumholz, David Madigan, George Hripcsak, Marc A. Suchard

J. Am. Medical Informatics Assoc., 2020

Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.

Simon Dellicour, Philippe Lemey, Jean Artois, Tommy T. Lam, Alice Fusaro, Isabella Monne, Giovanni Cattoli, Dmitry Kuznetsov, Ioannis Xenarios, Gwenaelle Dauphin, Wantanee Kalpravidh, Sophie von Dobschütz, Filip Claes, Scott H. Newman, Marc A. Suchard, Guy Baele, Marius Gilbert

Bioinform., 2020

Evaluation of Large-scale Propensity Score Modeling and Covariate Balance on Potential Unmeasured Confounding in Observational Research.

Ruijun Chen, Martijn J. Schuemie, Marc A. Suchard, Anna Ostropolets, Linying Zhang, Patrick B. Ryan, George Hripcsak

Proceedings of the AMIA 2020, 2020

2019

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

Remco R. Bouckaert, Timothy G. Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K. Mendes, Nicola F. Müller, Huw A. Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni, Marc A. Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J. Drummond

PLoS Comput. Biol., 2019

2018

Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data.

Jenna Marie Reps, Martijn J. Schuemie, Marc A. Suchard, Patrick B. Ryan, Peter R. Rijnbeek

J. Am. Medical Informatics Assoc., 2018

2017

Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.

Daniel Magee, Marc A. Suchard, Matthew Scotch

PLoS Comput. Biol., 2017

Virus genomes reveal factors that spread and sustained the Ebola epidemic.

Gytis Dudas, Luiz Max Carvalho, Trevor Bedford, Andrew J. Tatem, Guy Baele, Nuno R. Faria, Daniel J. Park, Jason T. Ladner, Armando Arias, Danny Asogun, Filip Bielejec, Sarah L. Caddy, Matthew Cotten, Jonathan D'Ambrozio, Simon Dellicour, Antonino Di Caro, Joseph W. Diclaro, Sophie Duraffour, Michael J. Elmore, Lawrence S. Fakoli, Ousmane Faye, Merle L. Gilbert, Sahr M. Gevao, Stephen Gire, Adrianne Gladden-Young, Andreas Gnirke, Augustine Goba, Donald S. Grant, Bart L. Haagmans, Julian A. Hiscox, Umaru Jah, Jeffrey R. Kugelman, Di Liu, Jia Lu, Christine M. Malboeuf, Suzanne Mate, David A. Matthews, Christian B. Matranga, Luke W. Meredith, James Qu, Joshua Quick, Suzan D. Pas, My V. T. Phan, Georgios Pollakis, Chantal B. Reusken, Mariano Sanchez-Lockhart, Stephen F. Schaffner, John S. Schieffelin, Rachel S. G. Sealfon, Etienne Simon-Loriere, Saskia L. Smits, Kilian Stoecker, Lucy Thorne, Ekaete Alice Tobin, Mohamed A. Vandi, Simon J. Watson, Kendra West, Shannon Whitmer, Michael R. Wiley, Sarah M. Winnicki, Shirlee Wohl, Roman Wölfel, Nathan L. Yozwiak, Kristian G. Andersen, Sylvia O. Blyden, Fatorma Bolay, Miles W. Carroll, Bernice Dahn, Boubacar Diallo, Pierre Formenty, Christophe Fraser, George F. Gao, Robert F. Garry, Ian Goodfellow, Stephan Günther, Christian T. Happi, Edward C. Holmes, Brima Kargbo, Sakoba Keïta, Paul Kellam, Marion Koopmans, Jens H. Kuhn, Nicholas J. Loman, N'Faly Magassouba, Dhamari Naidoo, Stuart T. Nichol, Tolbert Nyenswah, Gustavo F. Palacios, Oliver G. Pybus, Pardis C. Sabeti, Amadou Sall, Ute Ströher, Isatta Wurie, Marc A. Suchard, Philippe Lemey, Andrew Rambaut

Nat., 2017

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.

Guy Baele, Philippe Lemey, Andrew Rambaut, Marc A. Suchard

Bioinform., 2017

2016

Hierarchical models for multiple, rare outcomes using massive observational healthcare databases.

Trevor R. Shaddox, Patrick B. Ryan, Martijn J. Schuemie, David Madigan, Marc A. Suchard

Stat. Anal. Data Min., 2016

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference.

Michael D. Karcher, Julia A. Palacios, Trevor Bedford, Marc A. Suchard, Vladimir N. Minin

PLoS Comput. Biol., 2016

2015

Global circulation patterns of seasonal influenza viruses vary with antigenic drift.

Trevor Bedford, Steven Riley, Ian G. Barr, Shobha Broor, Mandeep Chadha, Nancy J. Cox, Rodney S. Daniels, C. Palani Gunasekaran, Aeron C. Hurt, Anne Kelso, Alexander Klimov, Nicola S. Lewis, Xiyan Li, John W. McCauley, Takato Odagiri, Varsha Potdar, Andrew Rambaut, Yuelong Shu, Eugene Skepner, Derek J. Smith, Marc A. Suchard, Masato Tashiro, Dayan Wang, Xiyan Xu, Philippe Lemey, Colin A. Russell

Nat., 2015

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.

George Hripcsak, Jon D. Duke, Nigam H. Shah, Christian G. Reich, Vojtech Huser, Martijn J. Schuemie, Marc A. Suchard, Rae Woong Park, Ian Chi Kei Wong, Peter R. Rijnbeek, Johan van der Lei, Nicole Pratt, G. Niklas Norén, Yu-Chuan Li, Paul E. Stang, David Madigan, Patrick B. Ryan

Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

2014

The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.

Bram Vrancken, Andrew Rambaut, Marc A. Suchard, Alexei J. Drummond, Guy Baele, Inge Derdelinckx, Eric Van Wijngaerden, Anne-Mieke Vandamme, Kristel Van Laethem, Philippe Lemey

PLoS Comput. Biol., 2014

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis.

Remco R. Bouckaert, Joseph Heled, Denise Kühnert, Timothy G. Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond

PLoS Comput. Biol., 2014

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.

Filip Bielejec, Philippe Lemey, Luiz Carvalho, Guy Baele, Andrew Rambaut, Marc A. Suchard

BMC Bioinform., 2014

2013

Massive Parallelization of Serial Inference Algorithms for a Complex Generalized Linear Model.

Marc A. Suchard, Shawn E. Simpson, Ivan Zorych, Patrick B. Ryan, David Madigan

ACM Trans. Model. Comput. Simul., 2013

Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.

Bram Vrancken, Andrew Rambaut, Guy Baele, Anne-Mieke Vandamme, Kristel Van Laethem, Eric Van Wijngaerden, Alexei J. Drummond, Marc A. Suchard, Philippe Lemey

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012

A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses.

Yu-Nong Gong, Guang-Wu Chen, Marc A. Suchard

Comput. Biol. Chem., 2012

A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection.

Philippe Lemey, Vladimir N. Minin, Filip Bielejec, Sergei L. Kosakovsky Pond, Marc A. Suchard

Bioinform., 2012

2011

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics.

Filip Bielejec, Andrew Rambaut, Marc A. Suchard, Philippe Lemey

Bioinform., 2011

2009

Bayesian Phylogeography Finds Its Roots.

Philippe Lemey, Andrew Rambaut, Alexei J. Drummond, Marc A. Suchard

PLoS Comput. Biol., 2009

Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment.

Christina M. R. Kitchen, Jing Kroll, Daniel R. Kuritzkes, Erik Bloomquist, Steven G. Deeks, Marc A. Suchard

Comput. Stat. Data Anal., 2009

Many-core algorithms for statistical phylogenetics.

Marc A. Suchard, Andrew Rambaut

Bioinform., 2009

Improving phylogenetic analyses by incorporating additional information from genetic sequence databases.

Li-Jung Liang, Robert E. Weiss, Benjamin D. Redelings, Marc A. Suchard

Bioinform., 2009

2007

cBrother: relaxing parental tree assumptions for Bayesian recombination detection.

Fang Fang, Jing Ding, Vladimir N. Minin, Marc A. Suchard, Karin S. Dorman

Bioinform., 2007

Hot and Cold: Spatial Fluctuation in HIV-1 Recombination Rates.

Misha L. Rajaram, Vladimir N. Minin, Marc A. Suchard, Karin S. Dorman

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006

BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.

Marc A. Suchard, Benjamin D. Redelings

Bioinform., 2006

2005

Dual multiple change-point model leads to more accurate recombination detection.

Vladimir N. Minin, Karin S. Dorman, Fang Fang, Marc A. Suchard

Bioinform., 2005