Fan Nie

According to our database, Fan Nie authored at least 13 papers between 2019 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Graph Out-of-Distribution Generalization via Causal Intervention.

Qitian Wu, Fan Nie, Chenxiao Yang, Tianyi Bao, Junchi Yan

CoRR, 2024

2023

Why Increase of Heterogeneity Signals Pre-Deterioration During Tumor Progression: A Unified Mathematical Model.

Yuanling Niu, Hao Kang, Pingyang Wang, Chenchen Guo, Fan Nie, Hongbin Ji, Jiarui Wu, Luonan Chen

SIAM J. Appl. Math., April, 2023

NanoSNP: a progressive and haplotype-aware SNP caller on low-coverage nanopore sequencing data.

Neng Huang, Minghua Xu, Fan Nie, Peng Ni, Chuan-Le Xiao, Feng Luo, Jianxin Wang

Bioinform., January, 2023

Advective Diffusion Transformers for Topological Generalization in Graph Learning.

Qitian Wu, Chenxiao Yang, Kaipeng Zeng, Fan Nie, Michael Bronstein, Junchi Yan

CoRR, 2023

Uncertainty-Aware Decision Transformer for Stochastic Driving Environments.

Zenan Li, Fan Nie, Qiao Sun, Fang Da, Hang Zhao

CoRR, 2023

Boosting Offline Reinforcement Learning for Autonomous Driving with Hierarchical Latent Skills.

Zenan Li, Fan Nie, Qiao Sun, Fang Da, Hang Zhao

CoRR, 2023

Simplifying and Empowering Transformers for Large-Graph Representations.

Qitian Wu, Wentao Zhao, Chenxiao Yang, Hengrui Zhang, Fan Nie, Haitian Jiang, Yatao Bian, Junchi Yan

Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

2022

SACall: A Neural Network Basecaller for Oxford Nanopore Sequencing Data Based on Self-Attention Mechanism.

Neng Huang, Fan Nie, Peng Ni, Feng Luo, Jianxin Wang

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Fec: a fast error correction method based on two-rounds overlapping and caching.

Jun Zhang, Fan Nie, Neng Huang, Peng Ni, Feng Luo, Jianxin Wang

Bioinform., 2022

BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer.

Neng Huang, Fan Nie, Peng Ni, Xin Gao, Feng Luo, Jianxin Wang

Briefings Bioinform., 2022

GraphDE: A Generative Framework for Debiased Learning and Out-of-Distribution Detection on Graphs.

Zenan Li, Qitian Wu, Fan Nie, Junchi Yan

Proceedings of the Advances in Neural Information Processing Systems 35: Annual Conference on Neural Information Processing Systems 2022, 2022

2021

NeuralPolish: a novel Nanopore polishing method based on alignment matrix construction and orthogonal Bi-GRU Networks.

Neng Huang, Fan Nie, Peng Ni, Feng Luo, Xin Gao, Jianxin Wang

Bioinform., 2021

2019

An attention-based neural network basecaller for Oxford Nanopore sequencing data.

Neng Huang, Fan Nie, Peng Ni, Feng Luo, Jianxin Wang

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019