Gongbo Zhang

According to our database, Gongbo Zhang authored at least 44 papers between 2015 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Scalable Scientific Interest Profiling Using Large Language Models.

Yilun Liang, Gongbo Zhang, Edward Sun, Betina Idnay, Yilu Fang, Fangyi Chen, Casey N. Ta, Yifan Peng, Chunhua Weng

CoRR, August, 2025

EvidenceOutcomes: a Dataset of Clinical Trial Publications with Clinically Meaningful Outcomes.

Yiliang Zhou, Abigail M. Newbury, Gongbo Zhang, Betina Ross S. Idnay, Hao Liu, Chunhua Weng, Yifan Peng

CoRR, June, 2025

UniGenX: Unified Generation of Sequence and Structure with Autoregressive Diffusion.

Gongbo Zhang, Yanting Li, Renqian Luo, Pipi Hu, Zeru Zhao, Lingbo Li, Guoqing Liu, Zun Wang, Ran Bi, Kaiyuan Gao, Liya Guo, Yu Xie, Chang Liu, Jia Zhang, Tian Xie, Robert Pinsler, Claudio Zeni, Ziheng Lu, Yingce Xia, Marwin H. S. Segler, Maik Riechert, Li Yuan, Lei Chen, Haiguang Liu, Tao Qin

CoRR, March, 2025

Efficient Learning for Selecting Top-m Context-Dependent Designs.

Gongbo Zhang, Sihua Chen, Kuihua Huang, Yijie Peng

IEEE Trans Autom. Sci. Eng., 2025

Leveraging long context in retrieval augmented language models for medical question answering.

Gongbo Zhang, Zihan Xu, Qiao Jin, Fangyi Chen, Yilu Fang, Yi Liu, Justin F. Rousseau, Ziyang Xu, Zhiyong Lu, Chunhua Weng, Yifan Peng

npj Digit. Medicine, 2025

CLEAR: A vision to support clinical evidence lifecycle with continuous learning.

Yilu Fang, Gongbo Zhang, Fangyi Chen, George Hripcsak, Yifan Peng, Patrick B. Ryan, Chunhua Weng

J. Biomed. Informatics, 2025

Mini-mental status examination phenotyping for Alzheimer's disease patients using both structured and narrative electronic health record features.

Betina Idnay, Gongbo Zhang, Fangyi Chen, Casey N. Ta, Matthew W. Schelke, Karen Marder, Chunhua Weng

J. Am. Medical Informatics Assoc., 2025

Semi-supervised learning from small annotated data and large unlabeled data for fine-grained Participants, Intervention, Comparison, and Outcomes entity recognition.

Fangyi Chen, Gongbo Zhang, Yilu Fang, Yifan Peng, Chunhua Weng

J. Am. Medical Informatics Assoc., 2025

An Efficient Node Selection Policy for Monte Carlo Tree Search with Neural Networks: <i>INFORMS Journal on Computing</i> Meritorious Paper Awardee.

Xiaotian Liu, Yijie Peng, Gongbo Zhang, Ruihan Zhou

INFORMS J. Comput., 2025

FABind+: Enhancing Molecular Docking through Improved Pocket Prediction and Pose Generation.

Kaiyuan Gao, Qizhi Pei, Gongbo Zhang, Jinhua Zhu, Kun He, Lijun Wu

Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining, V.1, 2025

Natural Language Processing in Support of Evidence-based Medicine: A Scoping Review.

Zihan Xu, Haotian Ma, Yihao Ding, Gongbo Zhang, Chunhua Weng, Yifan Peng

Proceedings of the Findings of the Association for Computational Linguistics, 2025

2024

Closing the gap between open source and commercial large language models for medical evidence summarization.

Gongbo Zhang, Qiao Jin, Yiliang Zhou, Song Wang, Betina Idnay, Yiming Luo, Elizabeth Park, Jordan G. Nestor, Matthew E. Spotnitz, Ali Soroush, Thomas Campion, Zhiyong Lu, Chunhua Weng, Yifan Peng

npj Digit. Medicine, 2024

Leveraging generative AI for clinical evidence synthesis needs to ensure trustworthiness.

Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng

J. Biomed. Informatics, 2024

Rare disease diagnosis using knowledge guided retrieval augmentation for ChatGPT.

Charlotte Zelin, Wendy K. Chung, Mederic Jeanne, Gongbo Zhang, Chunhua Weng

J. Biomed. Informatics, 2024

Criteria2Query 3.0: Leveraging generative large language models for clinical trial eligibility query generation.

Jimyung Park, Yilu Fang, Casey N. Ta, Gongbo Zhang, Betina Idnay, Fangyi Chen, David Feng, Rebecca Shyu, Emily R. Gordon, Matthew E. Spotnitz, Chunhua Weng

J. Biomed. Informatics, 2024

A span-based model for extracting overlapping PICO entities from randomized controlled trial publications.

Gongbo Zhang, Yiliang Zhou, Yan Hu, Hua Xu, Chunhua Weng, Yifan Peng

J. Am. Medical Informatics Assoc., 2024

Semi-Supervised Learning from Small Annotated Data and Large Unlabeled Data for Fine-grained PICO Entity Recognition.

Fangyi Chen, Gongbo Zhang, Yilu Fang, Yifan Peng, Chunhua Weng

CoRR, 2024

A MapReduce Approach to Effectively Utilize Long Context Information in Retrieval Augmented Language Models.

Gongbo Zhang, Zihan Xu, Qiao Jin, Fangyi Chen, Yilu Fang, Yi Liu, Justin F. Rousseau, Ziyang Xu, Zhiyong Lu, Chunhua Weng, Yifan Peng

CoRR, 2024

Demystifying Large Language Models for Medicine: A Primer.

Qiao Jin, Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang, Zifeng Wang, Guangzhi Xiong, Po-Ting Lai, Qingqing Zhu, Benjamin Hou, Maame Sarfo-Gyamfi, Gongbo Zhang, Aidan Gilson, Balu Bhasuran, Zhe He, Aidong Zhang, Jimeng Sun, Chunhua Weng, Ronald M. Summers, Qingyu Chen, Yifan Peng, Zhiyong Lu

CoRR, 2024

A Span-based Model for Extracting Overlapping PICO Entities from RCT Publications.

Gongbo Zhang, Yiliang Zhou, Yan Hu, Hua Xu, Chunhua Weng, Yifan Peng

CoRR, 2024

Solving Mixed Integer Linear Programs by Monte Carlo Tree Search.

Gongbo Zhang, Yijie Peng

Proceedings of the Winter Simulation Conference, 2024

2023

Efficient Sampling Policy for Selecting a Subset With the Best.

Gongbo Zhang, Bin Chen, Qing-Shan Jia, Yijie Peng

IEEE Trans. Autom. Control., August, 2023

Asymptotically Optimal Sampling Policy for Selecting Top-<i>m</i> Alternatives.

Gongbo Zhang, Yijie Peng, Jianghua Zhang, Enlu Zhou

INFORMS J. Comput., 2023

Leveraging Generative AI for Clinical Evidence Summarization Needs to Achieve Trustworthiness.

Gongbo Zhang, Qiao Jin, Denis Jered McInerney, Yong Chen, Fei Wang, Curtis L. Cole, Qian Yang, Yanshan Wang, Bradley A. Malin, Mor Peleg, Byron C. Wallace, Zhiyong Lu, Chunhua Weng, Yifan Peng

CoRR, 2023

A Simulation Optimization Method for Scheduling Automated Guided Vehicles in a Stochastic Warehouse Management System.

Gongbo Zhang, Xiaotian Liu, Yijie Peng

Proceedings of the Winter Simulation Conference, 2023

Top-Two Thompson Sampling for Selecting Context-Dependent Best Designs.

Xinbo Shi, Yijie Peng, Gongbo Zhang

Proceedings of the Winter Simulation Conference, 2023

2022

ADE-Net: A Deep Neural Network for DAS Earthquake Detection Trained With a Limited Number of Positive Samples.

Hao Lv, Xiangfang Zeng, Feng Bao, Jun Xie, Rongbing Lin, Zhenghong Song, Gongbo Zhang

IEEE Trans. Geosci. Remote. Sens., 2022

A Stochastic Approximation Method for Simulation-Based Quantile Optimization.

Jiaqiao Hu, Yijie Peng, Gongbo Zhang, Qi Zhang

INFORMS J. Comput., 2022

Translational drug-interaction corpus.

Shijun Zhang, Heng-Yi Wu, Lei Wang, Gongbo Zhang, Luis M. Rocha, Hagit Shatkay, Lang Li

Database J. Biol. Databases Curation, 2022

An Efficient Dynamic Sampling Policy for Monte Carlo Tree Search.

Gongbo Zhang, Yijie Peng, Yilong Xu

Proceedings of the Winter Simulation Conference, 2022

Thompson Sampling Meets Ranking and Selection.

Yijie Peng, Gongbo Zhang

Proceedings of the Winter Simulation Conference, 2022

2021

Insights from the P Wave Travel Time Tomography in the Upper Mantle Beneath the Central Philippines.

Huiyan Shi, Tonglin Li, Rui Sun, Gongbo Zhang, Rongzhe Zhang, Xinze Kang

Remote. Sens., 2021

Structural Characteristics of Moho Surface Based on Time Series Function of Natural Earthquakes.

Xuelei Li, Zhuo Jia, Nanqiao Du, Yi Xu, Gongbo Zhang

Remote. Sens., 2021

Utilizing image and caption information for biomedical document classification.

Pengyuan Li, Xiangying Jiang, Gongbo Zhang, Juan Trelles Trabucco, Daniela Raciti, Cynthia L. Smith, Martin Ringwald, G. Elisabeta Marai, Cecilia N. Arighi, Hagit Shatkay

Bioinform., 2021

Corrigendum to: Utilizing image and caption information for biomedical document classification.

Pengyuan Li, Xiangying Jiang, Gongbo Zhang, Juan Trelles Trabucco, Daniela Raciti, Cynthia L. Smith, Martin Ringwald, G. Elisabeta Marai, Cecilia N. Arighi, Hagit Shatkay

Bioinform., 2021

Dynamic Sampling Policy For Subset Selection.

Gongbo Zhang, Yijie Peng, Jianghua Zhang, Enlu Zhou

Proceedings of the Winter Simulation Conference, 2021

Gradient-Based Simulation Optimization for Economic Design of Control Charts.

Gongbo Zhang, Yijie Peng, Shuhuai Yang

Proceedings of the 17th IEEE International Conference on Automation Science and Engineering, 2021

2020

Sequential Sampling for a Ranking and Selection Problem with Exponential Sampling Distributions.

Gongbo Zhang, Haidong Li, Yijie Peng

Proceedings of the Winter Simulation Conference, 2020

Dynamic Sampling Allocation for Selecting a Good Enough Alternative.

Gongbo Zhang, Chun-Hung Chen, Qing-Shan Jia, Yijie Peng

Proceedings of the 16th IEEE International Conference on Automation Science and Engineering, 2020

2019

An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.

Xiangying Jiang, Martin Ringwald, Judith A. Blake, Cecilia N. Arighi, Gongbo Zhang, Hagit Shatkay

Database J. Biol. Databases Curation, 2019

2018

Identifying Experimental Evidence in Biomedical Abstracts Relevant to Drug-Drug Interactions.

Gongbo Zhang, Debarati Roychowdhury, Pengyuan Li, Heng-Yi Wu, Shijun Zhang, Lang Li, Hagit Shatkay

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017

Identifying articles relevant to drug-drug interaction: Addressing class imbalance.

Gongbo Zhang, Moumita Bhattacharya, Heng-Yi Wu, Pengyuan Li, Lang Li, Hagit Shatkay

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2015

On the benefits of digital libraries of case studies of analogical design: Documentation, access, analysis, and learning.

Ashok K. Goel, Gongbo Zhang, Bryan Wiltgen, Yuqi Zhang, Swaroop Vattam, Jeannette Yen

Artif. Intell. Eng. Des. Anal. Manuf., 2015

Closing the Gap: Domain Adaptation from Explicit to Implicit Discourse Relations.

Yangfeng Ji, Gongbo Zhang, Jacob Eisenstein

Proceedings of the 2015 Conference on Empirical Methods in Natural Language Processing, 2015