Shubo Tian

According to our database, Shubo Tian authored at least 25 papers between 2021 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

MedHopQA: A Disease-Centered Multi-Hop Reasoning Benchmark and Evaluation Framework for LLM-Based Biomedical Question Answering.

Rezarta Islamaj, Robert Leaman, Joey Chan, Nicholas Wan, Qiao Jin, Natalie Xie, W. John Wilbur, Shubo Tian, Lana Yeganova, Po-Ting Lai, Chih-Hsuan Wei, Yifan Yang, Yao Ge, Qingqing Zhu, Zhizheng Wang, Zhiyong Lu

CoRR, May, 2026

DeepER-Med: Advancing Deep Evidence-Based Research in Medicine Through Agentic AI.

Zhizheng Wang, Chih-Hsuan Wei, Joey Chan, Robert Leaman, Chi-Ping Day, Chuan Wu, Mark A Knepper, Antolin Serrano Farias, Jordina Rincon-Torroella, Hasan Slika, Betty Tyler, Ryan Huu-Tuan Nguyen, Asmita Indurkar, Mélanie Hébert, Shubo Tian, Lauren He, Noor Naffakh, Aseem Aseem, Nicholas Wan, Emily Y. Chew, Tiarnan D. L. Keenan, Zhiyong Lu

CoRR, April, 2026

Exploring Anti-Aging Literature via ConvexTopics and Large Language Models.

Lana Yeganova, Won Kim, Shubo Tian, Natalie Xie, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

CoRR, February, 2026

2025

Knowledge-guided Contextual Gene Set Analysis Using Large Language Models.

Zhizheng Wang, Chi-Ping Day, Chih-Hsuan Wei, Qiao Jin, Robert Leaman, Yifan Yang, Shubo Tian, Aodong Qiu, Yin Fang, Qingqing Zhu, Xinghua Lu, Zhiyong Lu

CoRR, June, 2025

A comprehensive large-scale biomedical knowledge graph for AI-powered data-driven biomedical research.

Yuan Zhang, Xin Sui, Feng Pan, Kaixian Yu, Keqiao Li, Shubo Tian, Arslan Erdengasileng, Qing Han, Wanjing Wang, Jianan Wang, Jian Wang, Donghu Sun, Henry Chung, Jun Zhou, Eric Zhou, Ben Lee, Peili Zhang, Xing Qiu, Tingting Zhao, Jinfeng Zhang

Nat. Mac. Intell., 2025

Enhancing biomedical relation extraction with directionality.

Po-Ting Lai, Chih-Hsuan Wei, Shubo Tian, Robert Leaman, Zhiyong Lu

Bioinform., 2025

2024

Response to Letter to Editor 'Timely need for navigating the potential and downsides of LLMs in healthcare and biomedicine'.

Shubo Tian, Qiao Jin, Zhiyong Lu

Briefings Bioinform., May, 2024

Archive of PubTator 3.0 source code and trained models.

Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu

Dataset, March, 2024

Opportunities and challenges for ChatGPT and large language models in biomedicine and health.

Shubo Tian, Qiao Jin, Lana Yeganova, Po-Ting Lai, Qingqing Zhu, Xiuying Chen, Yifan Yang, Qingyu Chen, Won Kim, Donald C. Comeau, Rezarta Islamaj, Aadit Kapoor, Xin Gao, Zhiyong Lu

Briefings Bioinform., January, 2024

Large language models in biomedicine and health: current research landscape and future directions.

Zhiyong Lu, Yifan Peng, Trevor Cohen, Marzyeh Ghassemi, Chunhua Weng, Shubo Tian

J. Am. Medical Informatics Assoc., 2024

Demystifying Large Language Models for Medicine: A Primer.

Qiao Jin, Nicholas Wan, Robert Leaman, Shubo Tian, Zhizheng Wang, Yifan Yang, Zifeng Wang, Guangzhi Xiong, Po-Ting Lai, Qingqing Zhu, Benjamin Hou, Maame Sarfo-Gyamfi, Gongbo Zhang, Aidan Gilson, Balu Bhasuran, Zhe He, Aidong Zhang, Jimeng Sun, Chunhua Weng, Ronald M. Summers, Qingyu Chen, Yifan Peng, Zhiyong Lu

CoRR, 2024

GeneAgent: Self-verification Language Agent for Gene Set Knowledge Discovery using Domain Databases.

Zhizheng Wang, Qiao Jin, Chih-Hsuan Wei, Shubo Tian, Po-Ting Lai, Qingqing Zhu, Chi-Ping Day, Christina Ross, Zhiyong Lu

CoRR, 2024

Quality of Answers of Generative Large Language Models vs Peer Patients for Interpreting Lab Test Results for Lay Patients: Evaluation Study.

Zhe He, Balu Bhasuran, Qiao Jin, Shubo Tian, Karim Hanna, Cindy Shavor, Lisbeth Y. Garcia Arguello, Patrick Murray, Zhiyong Lu

CoRR, 2024

PubTator 3.0: an AI-powered Literature Resource for Unlocking Biomedical Knowledge.

Chih-Hsuan Wei, Alexis Allot, Po-Ting Lai, Robert Leaman, Shubo Tian, Ling Luo, Qiao Jin, Zhizheng Wang, Qingyu Chen, Zhiyong Lu

CoRR, 2024

Information Retrieval and Classification of Real-Time Multi-Source Hurricane Evacuation Notices.

Tingting Zhao, Shubo Tian, Jordan Daly, Melissa Geiger, Minna Jia, Jinfeng Zhang

CoRR, 2024

PubMed Computed Authors in 2024: an open resource of disambiguated author names in biomedical literature.

Shubo Tian, Qingyu Chen, Donald C. Comeau, W. John Wilbur, Zhiyong Lu

Bioinform., 2024

2023

Parsing Clinical Trial Eligibility Criteria for Cohort Query by a Multi-Input Multi-Output Sequence Labeling Model.

Shubo Tian, Pengfei Yin, Hansi Zhang, Arslan Erdengasileng, Jiang Bian, Zhe He

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

A Machine-Learning Based Approach for Predicting Older Adults' Adherence to Technology-Based Cognitive Training.

Zhe He, Shubo Tian, Ankita Singh, Shayok Chakraborty, Shenghao Zhang, Mia Liza A. Lustria, Neil Charness, Nelson A. Roque, Erin Harrell, Walter R. Boot

Inf. Process. Manag., 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.

Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Dogan, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu

CoRR, 2022

Temporal Subtyping of Alzheimer's Disease Using Medical Conditions Preceding Alzheimer's Disease Onset in Electronic Health Records.

Zhe He, Shubo Tian, Arslan Erdengasileng, Neil Charness, Jiang Bian

CoRR, 2022

Pre-trained models, data augmentation, and ensemble learning for biomedical information extraction and document classification.

Arslan Erdengasileng, Qing Han, Tingting Zhao, Shubo Tian, Xin Sui, Keqiao Li, Wanjing Wang, Jian Wang, Ting Hu, Feng Pan, Yuan Zhang, Jinfeng Zhang

Database J. Biol. Databases Curation, 2022

Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.

Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Saipradeep Vg, Zhiyong Lu

Database J. Biol. Databases Curation, 2022

Using Twitter Data Analysis to Understand the Perceptions, Awareness, and Barriers to the Wide Use of Pre-Exposure Prophylaxis in the United States.

Arslan Erdengasileng, Shubo Tian, Sara S. Green, Sylvie Naar, Zhe He

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

A PubMedBERT-based Classifier with Data Augmentation Strategy for Detecting Medication Mentions in Tweets.

Qing Han, Shubo Tian, Jinfeng Zhang

CoRR, 2021

Transformer-based named entity recognition for parsing clinical trial eligibility criteria.

Shubo Tian, Arslan Erdengasileng, Xi Yang, Yi Guo, Yonghui Wu, Jinfeng Zhang, Jiang Bian, Zhe He

Proceedings of the BCB '21: 12th ACM International Conference on Bioinformatics, 2021