Cecilia N. Arighi

According to our database1, Cecilia N. Arighi authored at least 44 papers between 2007 and 2019.

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Bibliography

2019
An effective biomedical document classification scheme in support of biocuration: addressing class imbalance.
Database, 2019

PIRSitePredict for protein functional site prediction using position-specific rules.
Database, 2019

2018
iPTMnet: an integrated resource for protein post-translational modification network discovery.
Nucleic Acids Research, 2018

iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.
Database, 2018

2017
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Nucleic Acids Research, 2017

On expert curation and scalability: UniProtKB/Swiss-Prot as a case study.
Bioinformatics, 2017

eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality.
Database, 2017

2016
Overview of the interactive task in BioCreative V.
Database, 2016

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.
Database, 2016

BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph.
Database, 2016

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Database, 2016

Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.
IEEE/ACM Trans. Comput. Biology Bioinform., 2015

miRTex: A Text Mining System for miRNA-Gene Relation Extraction.
PLoS Computational Biology, 2015

Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.
Database, 2015

2014
Protein Ontology: a controlled structured network of protein entities.
Nucleic Acids Research, 2014

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
Database, 2014

Expert curation in UniProtKB: a case study on dealing with conflicting and erroneous data.
Database, 2014

Overview of the gene ontology task at BioCreative IV.
Database, 2014

BC4GO: a full-text corpus for the BioCreative IV GO task.
Database, 2014

BioCreative-IV virtual issue.
Database, 2014

Knowledge Representation of Protein PTMs and Complexes in the Protein Ontology: Application to Multi-Faceted Disease Analysis.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2013
A framework for biomedical figure segmentation towards image-based document retrieval.
BMC Systems Biology, 2013

Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.
Database, 2013

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database, 2013

Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach.
Proceedings of the ACM Conference on Bioinformatics, 2013

An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
BioCreative-2012 Virtual Issue.
Database, 2012

Community annotation and bioinformatics workforce development in concert - Little Skate Genome Annotation Workshops and Jamborees.
Database, 2012

The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
Database, 2012

Text mining for the biocuration workflow.
Database, 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database, 2012

Pathway curation: Application of text-mining tools eGIFT and RLIMS-P.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

Robust segmentation of biomedical figures for image-based document retrieval.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
The Protein Ontology: a structured representation of protein forms and complexes.
Nucleic Acids Research, 2011

The Representation of Protein Complexes in the Protein Ontology (PRO).
BMC Bioinformatics, 2011

BioCreative III interactive task: an overview.
BMC Bioinformatics, 2011

Overview of the BioCreative III Workshop.
BMC Bioinformatics, 2011

Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

An Automatic System for Extracting Figures and Captions in Biomedical PDF Documents.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2009
An improved ontological representation of dendritic cells as a paradigm for all cell types.
BMC Bioinformatics, 2009

TGF-beta signaling proteins and the Protein Ontology.
BMC Bioinformatics, 2009

2008
Functional Annotation of Protein Isoforms and Modified Forms.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007
Framework for a Protein Ontology.
BMC Bioinformatics, 2007


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