Guillaume Bourque

According to our database, Guillaume Bourque authored at least 20 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Graph Genomes.

Cristian Groza, Xun Chen, Travis J. Wheeler, Guillaume Bourque, Clément Goubert

Dataset, May, 2024

EpiVar Browser: advanced exploration of epigenomics data under controlled access.

David R. Lougheed, Hanshi Liu, Katherine A. Aracena, Romain Grégoire, Alain Pacis, Tomi Pastinen, Luis B. Barreiro, Yann Joly, David Bujold, Guillaume Bourque

Bioinform., 2024

2023

Datasets and Scripts associated with "Cryptic endogenous retrovirus subfamilies in the primate lineage".

Xun Chen, Zicong Zhang, Yizhi Yan, Clément Goubert, Guillaume Bourque, Fumitaka Inoue

Dataset, December, 2023

RNAget: an API to securely retrieve RNA quantifications.

Sean Upchurch, Emilio Palumbo, Jeremy Adams, David Bujold, Guillaume Bourque, Jared Nedzel, Keenan Graham, Meenakshi S. Kagda, Pedro Assis, Benjamin C. Hitz, Emilio Righi, Roderic Guigó, Barbara J. Wold, Alvis Brazma, Julia Burchard, Joe Capka, Michael Cherry, Laura Clarke, Brian Craft, Manolis Dermitzakis, Mark Diekhans, John Dursi, Michael Sean Fitzsimons, Zac Flaming, Romina Garrido, Alfred Gil, Paul Godden, Matt Green, Mitch Guttman, Brian Haas, Max Haeussler, Bo Li, Sten Linnarsson, Adam Lipski, David Liu, Simonne Longerich, David R. Lougheed, Jonathan Manning, John C. Marioni, Christopher Meyer, Stephen B. Montgomery, Alyssa Morrow, Alfonso Muñoz-Pomer Fuentes, Jared L. Nedzel, David Nguyen, Kevin Osborn, Francis Ouellette, Irene Papatheodorou, Dmitri D. Pervouchine, Arun K. Ramani, Jordi Rambla, Bashir Sadjad, David Steinberg, Jeremiah Talkar, Timothy Tickle, Kathy Tzeng, Saman Vaisipour, Sean Watford, Barbara Wold, Zhenyu Zhang, Jing Zhu

Bioinform., April, 2023

Datasets and Scripts associated with "Transposable elements are associated with the variable response to influenza infection".

Xun Chen, Alain Pacis, Katherine A. Aracena, Tony Kwan, Cristian Groza, Yen Lung Lin, Renata Helena Monteiro Sindeaux, Vania Yotova, Albena Pramatarova, Marie-Michelle Simon, Tomi M. Pastinen, Luis Barreiro, Guillaume Bourque

Dataset, January, 2023

2022

Generalized Functional Pruning Optimal Partitioning (GFPOP) for Constrained Changepoint Detection in Genomic Data.

Toby Dylan Hocking, Guillem Rigaill, Paul Fearnhead, Guillaume Bourque

J. Stat. Softw., 2022

2020

Constrained Dynamic Programming and Supervised Penalty Learning Algorithms for Peak Detection in Genomic Data.

Toby Dylan Hocking, Guillem Rigaill, Paul Fearnhead, Guillaume Bourque

J. Mach. Learn. Res., 2020

Machine Learning Algorithms for Simultaneous Supervised Detection of Peaks in Multiple Samples andCell Types.

Toby Dylan Hocking, Guillaume Bourque

Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

2019

The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets.

Jonathan Laperle, Simon Hébert-Deschamps, Joanny Raby, David A. de Lima Morais, Michel Barrette, David Bujold, Charlotte Bastin, Marc-Antoine Robert, Jean-François Nadeau, Marie Harel, Alexei Nordell-Markovits, Alain Veilleux, Guillaume Bourque, Pierre-Étienne Jacques

Bioinform., 2019

eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.

Charles E. Breeze, Alex P. Reynolds, Jenny van Dongen, Ian Dunham, John Lazar, Shane J. Neph, Jeff Vierstra, Guillaume Bourque, Andrew E. Teschendorff, John A. Stamatoyannopoulos, Stephan Beck

Bioinform., 2019

The use of hyperspectral remote sensing to detect PCB contaminated soils in the 0.35 to 12 micron spectral range.

Josée Lévesque, Eldon Puckrin, Luc Levert, Guillaume Bourque

Proceedings of the 2019 IEEE International Geoscience and Remote Sensing Symposium, 2019

2018

MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis.

Jasmine Chong, Othman Soufan, Carin Li, Iurie Caraus, Shuzhao Li, Guillaume Bourque, David S. Wishart, Jianguo Xia

Nucleic Acids Res., 2018

2017

Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning.

Toby Dylan Hocking, Patricia Goerner-Potvin, Andreanne Morin, Xiaojian Shao, Tomi Pastinen, Guillaume Bourque

Bioinform., 2017

2015

PeakSeg: constrained optimal segmentation and supervised penalty learning for peak detection in count data.

Toby Hocking, Guillem Rigaill, Guillaume Bourque

Proceedings of the 32nd International Conference on Machine Learning, 2015

2010

webMGR: an online tool for the multiple genome rearrangement problem.

Chi Ho Lin, Hao Zhao, Sean Harry Lowcay, Atif Shahab, Guillaume Bourque

Bioinform., 2010

Prediction of low coverage prone regions for Illumina sequencing projects using a support vector machine.

Zejun Zheng, Bertil Schmidt, Guillaume Bourque

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2007

Recovering True Rearrangement Events on Phylogenetic Trees.

Hao Zhao, Guillaume Bourque

Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007

2006

Models and Methods in Comparative Genomics.

Guillaume Bourque, Louxin Zhang

Adv. Comput., 2006

2005

Maximizing Synteny Blocks to Identify Ancestral Homologs.

Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk

Proceedings of the Comparative Genomics, 2005

2004

Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues.

Guillaume Bourque, David Sankoff

J. Bioinform. Comput. Biol., 2004