Alvis Brazma
Orcid: 0000-0001-5988-7409
According to our database1,
Alvis Brazma
authored at least 85 papers
between 1986 and 2023.
Collaborative distances:
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Bibliography
2023
Bioinform., October, 2023
2022
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences.
Nucleic Acids Res., 2022
Nucleic Acids Res., 2022
2021
2020
2019
The PRIDE database and related tools and resources in 2019: improving support for quantification data.
Nucleic Acids Res., 2019
Nucleic Acids Res., 2019
Dynamics of gene regulatory networks and their dependence on network topology and quantitative parameters - the case of phage λ.
BMC Bioinform., 2019
2018
The BioStudies database - one stop shop for all data supporting a life sciences study.
Nucleic Acids Res., 2018
Nucleic Acids Res., 2018
2017
Orchestrating differential data access for translational research: a pilot implementation.
BMC Medical Informatics Decis. Mak., 2017
Bioinform., 2017
The RNASeq-er API - a gateway to systematically updated analysis of public RNA-seq data.
Bioinform., 2017
2016
Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants.
Nucleic Acids Res., 2016
Bioinform., 2016
2015
Bioinform., 2015
2014
Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
Nucleic Acids Res., 2014
Nucleic Acids Res., 2014
Proceedings of the Hybrid Systems Biology, 2014
2013
Nucleic Acids Res., 2013
Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum.
BMC Syst. Biol., 2013
2012
Gene Expression Atlas update - a value-added database of microarray and sequencing-based functional genomics experiments.
Nucleic Acids Res., 2012
Nucleic Acids Res., 2012
Fully scalable online-preprocessing algorithm for short oligonucleotide microarray atlases
CoRR, 2012
MageComet - web application for harmonizing existing large-scale experiment descriptions.
Bioinform., 2012
Data-driven information retrieval in heterogeneous collections of transcriptomics data links <i>SIM2s</i> to malignant pleural mesothelioma.
Bioinform., 2012
2011
ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments.
Nucleic Acids Res., 2011
SAIL - a software system for sample and phenotype availability across biobanks and cohorts.
Bioinform., 2011
2010
Nucleic Acids Res., 2010
The IronChip evaluation package: a package of perl modules for robust analysis of custom microarrays.
BMC Bioinform., 2010
Annotare - a tool for annotating high-throughput biomedical investigations and resulting data.
Bioinform., 2010
An information retrieval perspective on visualization of gene expression data with ontological annotation.
Proceedings of the IEEE International Conference on Acoustics, 2010
2009
ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression.
Nucleic Acids Res., 2009
Probabilistic retrieval and visualization of biologically relevant microarray experiments.
BMC Bioinform., 2009
Bioinform., 2009
2008
Nucleic Acids Res., 2008
Briefings Bioinform., 2008
Comparing and Analysing Gene Expression Patterns Across Animal Species Using 4DXpress.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008
2007
Prediction of Gene Expression in Embryonic Structures of <i>Drosophila melanogaster</i>.
PLoS Comput. Biol., 2007
ArrayExpress - a public database of microarray experiments and gene expression profiles.
Nucleic Acids Res., 2007
PASSIM - an open source software system for managing information in biomedical studies.
BMC Bioinform., 2007
2006
BMC Bioinform., 2006
ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression.
Bioinform., 2006
2005
Nucleic Acids Res., 2005
A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings.
Bioinform., 2005
The ArrayExpress gene expression database: a software engineering and implementation perspective.
Bioinform., 2005
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.
Bioinform., 2005
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005
2004
Expression Profiler: next generation - an online platform for analysis of microarray data.
Nucleic Acids Res., 2004
2003
Nucleic Acids Res., 2003
Microarray gene expression data analysis - a beginner's guide.
Blackwell, ISBN: 978-1-40510-682-5, 2003
2002
Building and analysing genome-wide gene disruption networks.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
Correlating gene promoters and expression in gene disruption experiments.
Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002
2001
2000
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data.
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
1998
J. Comput. Biol., 1998
Proceedings of the Grammatical Inference, 4th International Colloquium, 1998
Predicting gene regulatory elements from their expression data in the complete yeast genome.
Proceedings of the German Conference on Bioinformatics, 1998
1997
Noise-Tolerant Efficient Inductive Synthesis of Regular Expressions from Good Examples.
New Gener. Comput., 1997
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997
Finding transcription factor binding site combinations in the yeast genome.
Proceedings of the German Conference on Bioinformatics, 1997
Data Mining and Visualisation in Molecular Biology Databases.
Proceedings of the German Conference on Bioinformatics, 1997
1996
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, 1996
Discovering Unbounded Unions of Regular Pattern Languages from Positive Examples (Extended Abstract).
Proceedings of the Algorithms and Computation, 7th International Symposium, 1996
1995
Proceedings of the Computational Learning Theory, Second European Conference, 1995
1994
Proceedings of the Graph Drawing, DIMACS International Workshop, 1994
Proceedings of the Algorithmic Learning Theory, 1994
Proceedings of the Algorithmic Learning Theory, 1994
1993
Learning a Subclass of Regular Expressions by Recognizing Periodic Repetitions.
Proceedings of the Fourth Scandinavian Conference on Artificial Intelligence, 1993
Proceedings of the Sixth Annual ACM Conference on Computational Learning Theory, 1993
1991
Proceedings of the Baltic Computer Science, Selected Papers, 1991
1990
1986
Generalized Regular Expressions-A Language for Synthesis of Programs with Braching in Loops.
Theor. Comput. Sci., 1986