David Sankoff
Orcid: 0000-0001-8415-5189Affiliations:
- University of Ottawa, Ontario, Canada
According to our database1,
David Sankoff
authored at least 140 papers
between 1969 and 2023.
Collaborative distances:
Collaborative distances:
Awards
ACM Fellow
ACM Fellow 2023, "For contributions to research and leadership in computational biology and bioinformatics".
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
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on zbmath.org
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on orcid.org
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on id.loc.gov
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on d-nb.info
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on isni.org
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on dl.acm.org
On csauthors.net:
Bibliography
2023
Entropy, December, 2023
J. Comput. Biol., February, 2023
Proceedings of the Comparative Genomics - 20th International Conference, 2023
2022
Proceedings of the Comparative Genomics - 19th International Conference, 2022
2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
IEEE ACM Trans. Comput. Biol. Bioinform., 2021
Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences.
J. Comput. Biol., 2021
The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny.
J. Bioinform. Comput. Biol., 2021
Validation of Automated Chromosome Recovery in the Reconstruction of Ancestral Gene Order.
Algorithms, 2021
2020
RACCROCHE: Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-occurrences.
Proceedings of the Computational Advances in Bio and Medical Sciences, 2020
Proceedings of the Algorithms for Computational Biology, 2020
2019
Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment.
BMC Bioinform., 2019
A branching process for homology distribution-based inference of polyploidy, speciation and loss.
Algorithms Mol. Biol., 2019
2018
Evolutionary Model for the Statistical Divergence of Paralogous and Orthologous Gene Pairs Generated by Whole Genome Duplication and Speciation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
Bioinform., 2018
Speciation and Rate Variation in a Birth-and-Death Account of WGD and Fractionation; the Case of Solanaceae.
Proceedings of the Comparative Genomics - 16th International Conference, 2018
A Randomized FPT Approximation Algorithm for Maximum Alternating-Cycle Decomposition with Applications.
Proceedings of the Computing and Combinatorics - 24th International Conference, 2018
2017
Theor. Comput. Sci., 2017
The Similarity Distribution of Paralogous Gene Pairs Created by Recurrent Alternation of Polyploidization and Fractionation.
Proceedings of the Comparative Genomics - 15th International Workshop, 2017
2016
BMC Genom., 2016
A continuous analog of run length distributions reflecting accumulated fractionation events.
BMC Bioinform., 2016
Proceedings of the Algorithms for Computational Biology - Third International Conference, 2016
2015
Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling.
BMC Bioinform., December, 2015
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015
Proceedings of the 19th International Conference on Information Visualisation, 2015
Statistical analysis of fractionation resistance by functional category and expression level.
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
2014
Comput. Biol. Chem., 2014
2013
BMC Bioinform., 2013
The dynamics of functional classes of plant genes in rediploidized ancient polyploids.
BMC Bioinform., 2013
Proceedings of the Models and Algorithms for Genome Evolution, 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes.
BMC Bioinform., 2012
Generalized adjacency and the conservation of gene clusters in genetic networks defined by synthetic lethals.
BMC Bioinform., 2012
Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution.
BMC Bioinform., 2012
A consolidation algorithm for genomes fractionated after higher order polyploidization.
BMC Bioinform., 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
2011
J. Comput. Biol., 2011
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011
Generalized Adjacency in Genetic Networks and the Conservation of Functional Gene Clusters.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011
Proceedings of the ACM International Conference on Bioinformatics, 2011
2010
IEEE ACM Trans. Comput. Biol. Bioinform., 2010
A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances.
J. Comput. Biol., 2010
BMC Bioinform., 2010
Proceedings of the Comparative Genomics - International Workshop, 2010
2009
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
J. Comput. Biol., 2009
Gene Loss under Neighborhood Selection Following Whole genome Duplication and the Reconstruction of the Ancestral Populus genome.
J. Bioinform. Comput. Biol., 2009
BMC Bioinform., 2009
Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009
2008
J. Comput. Biol., 2008
Proceedings of the Advances in Bioinformatics and Computational Biology, 2008
A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2008
Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Proceedings of the Comparative Genomics, International Workshop, 2008
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008
Proceedings of the Bioinformatics Research and Applications, 2008
Poisson adjacency distributions in genome comparison: multichromosomal, circular, signed and unsigned cases.
Proceedings of the ECCB'08 Proceedings, 2008
2007
IEEE ACM Trans. Comput. Biol. Bioinform., 2007
J. Comput. Biol., 2007
Common Intervals and Symmetric Difference in a Model-Free Phylogenomics, with an Application to Streptophyte Evolution.
J. Comput. Biol., 2007
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007
Proceedings of the Comparative Genomics, RECOMB 2007 International Workshop, 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
Conserved segment statistics and rearrangement inferences in comparative genomics.
Proceedings of the Mathematics of Evolution and Phylogeny., 2007
2006
J. Comput. Biol., 2006
Proceedings of the Comparative Genomics, 2006
Proceedings of the Research in Computational Molecular Biology, 2006
2005
J. Comput. Biol., 2005
The Statistical Analysis of Spatially Clustered Genes under the Maximum Gap Criterion.
J. Comput. Biol., 2005
Proceedings of the Research in Computational Molecular Biology, 2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
2004
Improving Gene Network Inference by Comparing Expression Time-series across Species, Developmental Stages or Tissues.
J. Bioinform. Comput. Biol., 2004
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004
Proceedings of the Comparative Genomics, 2004
Proceedings of the Comparative Genomics, 2004
Proceedings of the Comparative Genomics, 2004
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004
2003
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003
2002
Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002
2000
J. Comput. Biol., 2000
Bioinform., 2000
1999
Electron. Notes Discret. Math., 1999
Proceedings of the Algorithms and Data Structures, 6th International Workshop, 1999
Probability models for genome rearrangement and linear invariants for phylogenetic inference.
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999
Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999
Proceedings of the Combinatorial Pattern Matching, 10th Annual Symposium, 1999
1998
Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998
Proceedings of the Combinatorial Pattern Matching, 9th Annual Symposium, 1998
Proceedings of the 36th Annual Meeting of the Association for Computational Linguistics and 17th International Conference on Computational Linguistics, 1998
1997
Proceedings of the Combinatorial Pattern Matching, 8th Annual Symposium, 1997
Proceedings of the Computing and Combinatorics, Third Annual International Conference, 1997
1996
Int. J. Found. Comput. Sci., 1996
Proceedings of the Combinatorial Pattern Matching, 7th Annual Symposium, 1996
1995
Exact and Approximation Algorithms for Sorting by Reversals, with Application to Genome Rearrangement.
Algorithmica, 1995
1994
Skewed Base Compositions, Asymmetric Transition Matrices, and Phylogenetic Invariants.
J. Comput. Biol., 1994
Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994
1993
Exact and Approximation Algorithms for the Inversion Distance Between Two Chromosomes.
Proceedings of the Combinatorial Pattern Matching, 4th Annual Symposium, 1993
1992
Proceedings of the Combinatorial Pattern Matching, Third Annual Symposium, 1992
1990
1982
1975
Math. Program., 1975
1973
Discret. Math., 1973
1971
1969
Proceedings of the Third International Conference on Computational Linguistics, 1969