Haim Ashkenazy

According to our database, Haim Ashkenazy authored at least 16 papers between 2010 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

PredictProtein - Predicting Protein Structure and Function for 29 Years.

Michael Bernhofer, Christian Dallago, Timothy Karl, Venkata P. Satagopam, Michael Heinzinger, Maria Littmann, Tobias Olenyi, Jiajun Qiu, Konstantin Schütze, Guy Yachdav, Haim Ashkenazy, Nir Ben-Tal, Yana Bromberg, Tatyana Goldberg, László Kaján, Seán I. O'Donoghue, Chris Sander, Andrea Schafferhans, Avner Schlessinger, Gerrit Vriend, Milot Mirdita, Piotr Gawron, Wei Gu, Yohan Jarosz, Christophe Trefois, Martin Steinegger, Reinhard Schneider, Burkhard Rost

Nucleic Acids Res., 2021

2017

TraitRateProp: a web server for the detection of trait-dependent evolutionary rate shifts in sequence sites.

Eli Levy Karin, Haim Ashkenazy, Susann Wicke, Tal Pupko, Itay Mayrose

Nucleic Acids Res., 2017

SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm.

Haim Ashkenazy, Eli Levy Karin, Zach Mertens, Reed A. Cartwright, Tal Pupko

Nucleic Acids Res., 2017

2016

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules.

Haim Ashkenazy, Shiran Abadi, Eric Martz, Ofer Chay, Itay Mayrose, Tal Pupko, Nir Ben-Tal

Nucleic Acids Res., 2016

2015

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters.

Itamar Sela, Haim Ashkenazy, Kazutaka Katoh, Tal Pupko

Nucleic Acids Res., 2015

Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations.

Aya Narunsky, Haim Ashkenazy, Rachel Kolodny, Nir Ben-Tal

BMC Bioinform., 2015

2014

PredictProtein - an open resource for online prediction of protein structural and functional features.

Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans, Manfred Roos, Michael Bernhofer, Lothar Richter, Haim Ashkenazy, Marco Punta, Avner Schlessinger, Yana Bromberg, Reinhard Schneider, Gerrit Vriend, Chris Sander, Nir Ben-Tal, Burkhard Rost

Nucleic Acids Res., 2014

2013

CoPAP: Coevolution of Presence-Absence Patterns.

Ofir Cohen, Haim Ashkenazy, Eli Levy Karin, David Burstein, Tal Pupko

Nucleic Acids Res., 2013

2012

FastML: a web server for probabilistic reconstruction of ancestral sequences.

Haim Ashkenazy, Osnat Penn, Adi Doron-Faigenboim, Ofir Cohen, Gina Cannarozzi, Oren Zomer, Tal Pupko

Nucleic Acids Res., 2012

Uncovering the co-evolutionary network among prokaryotic genes.

Ofir Cohen, Haim Ashkenazy, David Burstein, Tal Pupko

Bioinform., 2012

2011

Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site.

Gilad Wainreb, Lior Wolf, Haim Ashkenazy, Yves Dehouck, Nir Ben-Tal

Bioinform., 2011

Hidden conformations in protein structures.

Haim Ashkenazy, Ron Unger, Yossef Kliger

Bioinform., 2011

2010

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data.

Gilad Wainreb, Haim Ashkenazy, Yana Bromberg, Alina Starovolsky-Shitrit, Turkan Haliloglu, Eytan Ruppin, Karen B. Avraham, Burkhard Rost, Nir Ben-Tal

Nucleic Acids Res., 2010

GUIDANCE: a web server for assessing alignment confidence scores.

Osnat Penn, Eyal Privman, Haim Ashkenazy, Giddy Landan, Dan Graur, Tal Pupko

Nucleic Acids Res., 2010

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids.

Haim Ashkenazy, Elana Erez, Eric Martz, Tal Pupko, Nir Ben-Tal

Nucleic Acids Res., 2010

GLOOME: gain loss mapping engine.

Ofir Cohen, Haim Ashkenazy, Frida Belinky, Dorothée Huchon, Tal Pupko

Bioinform., 2010