Marco Punta

Orcid: 0000-0002-0050-0676

According to our database1, Marco Punta authored at least 23 papers between 2005 and 2022.

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Bibliography

2022
DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets.
PLoS Comput. Biol., October, 2022

2021
Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.
BMC Bioinform., 2021

2016
The Pfam protein families database: towards a more sustainable future.
Nucleic Acids Res., 2016

2015
The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Res., 2015

Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res., 2015

Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions.
BMC Bioinform., 2015

The complexity, challenges and benefits of comparing two transporter classification systems in TCDB and Pfam.
Briefings Bioinform., 2015

2014
PredictProtein - an open resource for online prediction of protein structural and functional features.
Nucleic Acids Res., 2014

Pfam: the protein families database.
Nucleic Acids Res., 2014

New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily.
BMC Bioinform., 2014

2013
LUD, a new protein domain associated with lactate utilization.
BMC Bioinform., 2013

The challenge of increasing Pfam coverage of the human proteome.
Database J. Biol. Databases Curation, 2013

2012
The Pfam protein families database.
Nucleic Acids Res., 2012

InterPro in 2011: new developments in the family and domain prediction database.
Nucleic Acids Res., 2012

AntiFam: a tool to help identify spurious ORFs in protein annotation.
Database J. Biol. Databases Curation, 2012

Metal Binding in Proteins: Machine Learning Complements X-Ray Absorption Spectroscopy.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2012

2009
Neural Networks Predict Protein Structure and Function.
Proceedings of the Artificial Neural Networks, 2009

2008
The Rough Guide to In Silico Function Prediction, or How To Use Sequence and Structure Information To Predict Protein Function.
PLoS Comput. Biol., 2008

MetalDetector: a web server for predicting metal-binding sites and disulfide bridges in proteins from sequence.
Bioinform., 2008

Session Introduction.
Proceedings of the Biocomputing 2008, 2008

2007
Natively unstructured regions in proteins identified from contact predictions.
Bioinform., 2007

Session Introduction.
Proceedings of the Biocomputing 2007, 2007

2005
PROFcon: novel prediction of long-range contacts.
Bioinform., 2005


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