Hannah Carter

According to our database, Hannah Carter authored at least 12 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

The Cancer Epitope Database and Analysis Resource (CEDAR).

Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters

Nucleic Acids Res., January, 2023

Predictive analyses of regulatory sequences with EUGENe.

Adam R. Klie, David Laub, James V. Talwar, Hayden Stites, Tobias Jores, Joe J. Solvason, Emma K. Farley, Hannah Carter

Nat. Comput. Sci., 2023

2021

Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.

Adam R. Klie, Brian Tsui, Shamim Mollah, Dylan Skola, Michelle Dow, Chun-Nan Hsu, Hannah Carter

Database J. Biol. Databases Curation, 2021

2019

Rare variant phasing using paired tumor: normal sequence data.

Alexandra R. Buckley, Trey Ideker, Hannah Carter, Nicholas J. Schork

BMC Bioinform., 2019

Extracting allelic read counts from 250, 000 human sequencing runs in Sequence Read Archive.

Brian Tsui, Michelle Dow, Dylan Skola, Hannah Carter

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

Computational KIR copy number discovery reveals interaction between inhibitory receptor burden and survival.

Rachel M. Pyke, Raphael Genolet, Alexandre Harari, George Coukos, David Gfeller, Hannah Carter

Proceedings of the Biocomputing 2019: Proceedings of the Pacific Symposium, 2019

2018

Erratum: Identifying mutation specific cancer pathways using a structurally resolved protein interaction network.

Billur Engin, Matan Hofree, Hannah Carter

Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2015

Identifying Mutation Specific Cancer Pathways Using a Structurally Resolved Protein Interaction Network.

Billur Engin, Matan Hofree, Hannah Carter

Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015

2014

A Probabilistic Model to Predict Clinical Phenotypic Traits from Genome Sequencing.

Yun-Ching Chen, Christopher Douville, Cheng Wang, Noushin Niknafs, Grace H. T. Yeo, Violeta Beleva Guthrie, Hannah Carter, Peter D. Stenson, David N. Cooper, Biao Li, Sean D. Mooney, Rachel Karchin

PLoS Comput. Biol., 2014

2013

CRAVAT: cancer-related analysis of variants toolkit.

Christopher Douville, Hannah Carter, Rick Kim, Noushin Niknafs, Mark Diekhans, Peter D. Stenson, David N. Cooper, Michael C. Ryan, Rachel Karchin

Bioinform., 2013

2011

CHASM and SNVBox: toolkit for detecting biologically important single nucleotide mutations in cancer.

Wing Chung Wong, Dewey Kim, Hannah Carter, Mark Diekhans, Michael C. Ryan, Rachel Karchin

Bioinform., 2011

2009

MODBASE, a database of annotated comparative protein structure models and associated resources.

Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali

Nucleic Acids Res., 2009