Chun-Nan Hsu

  • University of California San Diego, Center for Microbiome Innovation, La Jolla, CA, USA
  • Academia Sinica, Institute of Information Science, Taipei, Taiwan
  • University of Southern California, Information Sciences Institute (ISI), Los Angeles, CA, USA (PhD 1996)

According to our database1, Chun-Nan Hsu authored at least 92 papers between 1993 and 2021.

Collaborative distances:



In proceedings 
PhD thesis 


Online presence:



Weakly Supervised Contrastive Learning for Chest X-Ray Report Generation.
CoRR, 2021

Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition.
Database J. Biol. Databases Curation, 2021

Multi-Classification Study of the Tuberculosis with 3D CBAM-ResNet and EfficientNet.
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021

BLAR: Biomedical Local Acronym Resolver.
Proceedings of the 20th Workshop on Biomedical Language Processing, 2021

Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts.
Comput. Sci. Eng., 2020

Theoretical Knowledge Graph Reasoning via Ending Anchored Rules.
CoRR, 2020

Antibody Watch: Text Mining Antibody Specificity from the Literature.
CoRR, 2020

Learning Visual-Semantic Embeddings for Reporting Abnormal Findings on Chest X-rays.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2020, 2020

ImageCLEF2020: Laterality-Reduction Three-Dimensional CBAM-Resnet with Balanced Sampler for Multi-Binary Classification of Tuberculosis and CT Auto Reports.
Proceedings of the Working Notes of CLEF 2020, 2020

NormCo: Deep Disease Normalization for Biomedical Knowledge Base Construction.
Proceedings of the 1st Conference on Automated Knowledge Base Construction, 2019

Identifying and characterizing highly similar notes in big clinical note datasets.
J. Biomed. Informatics, 2018

The Impact of Automatic Pre-annotation in Clinical Note Data Element Extraction - the CLEAN Tool.
CoRR, 2018

Assessing value of biomedical digital repositories.
PeerJ Prepr., 2017

bioPDFX: preparing PDF scientific articles for biomedical text mining.
PeerJ Prepr., 2017

Deduplication in a massive clinical note dataset.
CoRR, 2017

The presence of highly similar notes within the MIMIC-III dataset.
Proceedings of the AMIA 2017, 2017

Erratum to: Weakly supervised learning of biomedical information extraction from curated data.
BMC Bioinform., 2016

Weakly supervised learning of biomedical information extraction from curated data.
BMC Bioinform., 2016

Natural Language Processing using Kepler Workflow System: First Steps.
Proceedings of the International Conference on Computational Science 2016, 2016

Developing an Electronic Health Record-Based Cohort of Patients with Inflammatory Bowel Diseases for Observational Patient-Centered Outcomes Research.
Proceedings of the AMIA 2016, 2016

Ensembles of NLP Tools for Data Element Extraction from Clinical Notes.
Proceedings of the AMIA 2016, 2016

Review and Evaluation of the State of Standardization of Computable Phenotype.
Proceedings of the AMIA 2016, 2016

Identifying Transformative Research in Biomedical Sciences.
Proceedings of the Technologies and Applications of Artificial Intelligence, 2014

Reconstructing Big Semantic Similarity Networks.
Proceedings of TextGraphs@EMNLP 2013: the 8th Workshop on Graph-based Methods for Natural Language Processing, 2013

Robust cell segmentation for schizosaccharomyces pombe images with focus gradient.
Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Identifying Transformative Scientific Research.
Proceedings of the 2013 IEEE 13th International Conference on Data Mining, 2013

Ranking of multidimensional drug profiling data by fractional-adjusted bi-partitional scores.
Bioinform., 2012

Simultaneous Segmentation of Cell and Nucleus in Schizosaccharomyces pombe Images with Focus Gradient.
Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Exploring Label Dependency in Active Learning for Phenotype Mapping.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

Introduction to special issue on large-scale machine learning.
ACM Trans. Intell. Syst. Technol., 2011

Automatic Morphological Subtyping Reveals New Roles of Caspases in Mitochondrial Dynamics.
PLoS Comput. Biol., 2011

Proceedings of the 3rd Asian Conference on Machine Learning, 2011

The gene normalization task in BioCreative III.
BMC Bioinform., 2011

UMARS: Un-MAppable Reads Solution.
BMC Bioinform., 2011

Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization.
BMC Bioinform., 2011

Time-Aware Ranking in Dynamic Citation Networks.
Proceedings of the Data Mining Workshops (ICDMW), 2011

Learning Phenotype Mapping for Integrating Large Genetic Data.
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

Fusion of systems for automated cell phenotype image classification.
Expert Syst. Appl., 2010

Learning to predict expression efficacy of vectors in recombinant protein production.
BMC Bioinform., 2010

A spectral graph theoretic approach to quantification and calibration of collective morphological differences in cell images.
Bioinform., 2010

Periodic step-size adaptation in second-order gradient descent for single-pass on-line structured learning.
Mach. Learn., 2009

Global and componentwise extrapolations for accelerating training of Bayesian networks and conditional random fields.
Data Min. Knowl. Discov., 2009

BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature.
BMC Bioinform., 2009

Periodic Step Size Adaptation for Single Pass On-line Learning.
Proceedings of the Advances in Neural Information Processing Systems 22: 23rd Annual Conference on Neural Information Processing Systems 2009. Proceedings of a meeting held 7-10 December 2009, 2009

Feature Space Transformation for Semi-Supervised Learning for Protein Subcellular Localization in Fluorescence Microscopy Images.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

Workshop summary: Automated interpretation and modelling of cell images.
Proceedings of the 26th Annual International Conference on Machine Learning, 2009

Accelerating EM by targeted aggressive double extrapolation.
Proceedings of the IEEE International Conference on Acoustics, 2009

Cross-lingual audio-to-text alignment for multimedia content management.
Decis. Support Syst., 2008

Integrating high dimensional bi-directional parsing models for gene mention tagging.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online).
BMC Bioinform., 2007

Boosting multiclass learning with repeating codes and weak detectors for protein subcellular localization.
Bioinform., 2007

多語聲學單位分類之最佳化研究 (The Study of Acoustic Model Clustering in Multilingual Speech Recognition) [In Chinese].
Proceedings of the 19th Conference on Computational Linguistics and Speech Processing, 2007

Analysis and Enhancement of Conditional Random Fields Gene Mention Taggers in BioCreative II Challenge Evaluation.
Proceedings of the Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), 2007

Training Conditional Random Fields by Periodic Step Size Adaptation for Large-Scale Text Mining.
Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007

Gene Name Service: No-Nonsense Alias Resolution Service for Homo Sapiens Genes.
Proceedings of the 2007 IEEE/WIC/ACM International Conference on Web Intelligence and International Conference on Intelligent Agent Technology, 2007

FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization.
Nucleic Acids Res., 2006

Language Identification by Using Syllable-Based Duration Classification on Code-Switching Speech.
Proceedings of the Chinese Spoken Language Processing, 5th International Symposium, 2006

Global and Componentwise Extrapolation for Accelerating Data Mining from Large Incomplete Data Sets with the EM Algorithm.
Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

Speech Recognition on Code-Switching Among the Chinese Dialects.
Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

Reconfigurable Web wrapper agents for biological information integration.
J. Assoc. Inf. Sci. Technol., 2005

Modeling Pronunciation Variation for Bi-Lingual Mandarin/Taiwanese Speech Recognition.
Int. J. Comput. Linguistics Chin. Lang. Process., 2005

A Recommender for Targeted Advertisement of Unsought Products in E-Commerce.
Proceedings of the 7th IEEE International Conference on E-Commerce Technology (CEC 2005), 2005

Triple Jump Acceleration for the EM Algorithm.
Proceedings of the 5th IEEE International Conference on Data Mining (ICDM 2005), 2005

Mining Skewed and Sparse Transaction Data for Personalized Shopping Recommendation.
Mach. Learn., 2004

華台雙語發音變異性之語音辨識研究及PDA之應用 (The study of pronunciation variations in Mandarin and Taiwanese and its application in PDA) [In Chinese].
Proceedings of the 16th Conference on Computational Linguistics and Speech Processing, 2004

A unified framework for large vocabulary speech recognition of mutually unintelligible Chinese "regionalects".
Proceedings of the INTERSPEECH 2004, 2004

Implications of the Dirichlet Assumption for Discretization of Continuous Variables in Naive Bayesian Classifiers.
Mach. Learn., 2003

View Inference for Heterogeneous XML Information Integration.
J. Intell. Inf. Syst., 2003

Reconfigurable Web Wrapper Agents.
IEEE Intell. Syst., 2003

Automatic information extraction from semi-structured Web pages by pattern discovery.
Decis. Support Syst., 2003

Large vocabulary taiwanese (min-nan) speech recognition using tone features and statistical pronunciation modeling.
Proceedings of the 8th European Conference on Speech Communication and Technology, EUROSPEECH 2003, 2003

Query Answering Using Ontologies in Agent-based Resource Sharing Environment for Biological Web Information Integrating.
Proceedings of IJCAI-03 Workshop on Information Integration on the Web (IIWeb-03), 2003

Reconfigurable Web Wrapper Agents for Web Information Integration.
Proceedings of IJCAI-03 Workshop on Information Integration on the Web (IIWeb-03), 2003

The Hybrid Poisson Aspect Model for Personalized Shopping Recommendation.
Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003

Speaker verification without background speaker models.
Proceedings of the 2003 IEEE International Conference on Acoustics, 2003

Bayesian classification for data from the same unknown class.
IEEE Trans. Syst. Man Cybern. Part B, 2002

The ANNIGMA-wrapper approach to fast feature selection for neural nets.
IEEE Trans. Syst. Man Cybern. Part B, 2002

Recognizing 100 Speakers Using Homologous Naive Bayes.
Proceedings of the PRICAI 2002: Trends in Artificial Intelligence, 2002

Induction of Integrated View for XML Data with Heterogeneous DTDs.
Proceedings of the 2001 ACM CIKM International Conference on Information and Knowledge Management, 2001

Semantic Query Optimization for Query Plans of Heterogeneous Multidatabase Systems.
IEEE Trans. Knowl. Data Eng., 2000

Why Discretization Works for Naive Bayesian Classifiers.
Proceedings of the Seventeenth International Conference on Machine Learning (ICML 2000), Stanford University, Stanford, CA, USA, June 29, 2000

Ontology Integration in XML.
Proceedings of the Seventeenth National Conference on Artificial Intelligence and Twelfth Conference on on Innovative Applications of Artificial Intelligence, July 30, 2000

Generating Finite-State Transducers for Semi-Structured Data Extraction from the Web.
Inf. Syst., 1998

Discovering Robust Knowledge from Databases that Change.
Data Min. Knowl. Discov., 1998

A weight analysis-based wrapper approach to neural nets feature subset selection.
Proceedings of the Tenth IEEE International Conference on Tools with Artificial Intelligence, 1998

Discovering Robust Knowledge from Dynamic Closed World Data.
Proceedings of the Thirteenth National Conference on Artificial Intelligence and Eighth Innovative Applications of Artificial Intelligence Conference, 1996

Using Inductive Learning To Generate Rules for Semantic Query Optimization.
Proceedings of the Advances in Knowledge Discovery and Data Mining., 1996

Estimating the Robustness of Discovered Knowledge.
Proceedings of the First International Conference on Knowledge Discovery and Data Mining (KDD-95), 1995

Rule Induction for Semantic Query Optimization.
Proceedings of the Knowledge Discovery in Databases: Papers from the 1994 AAAI Workshop, 1994

Cooperating Agents for Information Retrieval.
Proceedings of the Second International Conference on Cooperative Information Systems, 1994

Retrieving and Integrating Data from Multiple Information Sources.
Int. J. Cooperative Inf. Syst., 1993

Reformulating Query Plans for Multidatabase Systems.
Proceedings of the CIKM 93, 1993