Marc A. Martí-Renom

According to our database, Marc A. Martí-Renom authored at least 26 papers between 2000 and 2017.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2017

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors.

François Serra, Davide Baù, Mike Goodstadt, David Castillo, Guillaume J. Filion, Marc A. Martí-Renom

PLoS Comput. Biol., 2017

2015

Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze.

Francisco Martínez-Jiménez, Marc A. Martí-Renom

PLoS Comput. Biol., 2015

2013

Target Prediction for an Open Access Set of Compounds Active against <i>Mycobacterium tuberculosis</i>.

Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom

PLoS Comput. Biol., 2013

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.

Carsten Kemena, Giovanni Bussotti, Emidio Capriotti, Marc A. Martí-Renom, Cédric Notredame

Bioinform., 2013

2012

The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation.

Marc A. Martí-Renom

Proceedings of the Research in Computational Molecular Biology, 2012

2011

Bridging the Resolution Gap in Structural Modeling of 3D Genome Organization.

Marc A. Martí-Renom, Leonid A. Mirny

PLoS Comput. Biol., 2011

All-atom knowledge-based potential for RNA structure prediction and assessment.

Emidio Capriotti, Tomás Norambuena, Marc A. Martí-Renom, Francisco Melo

Bioinform., 2011

2010

Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.

Emidio Capriotti, Marc A. Martí-Renom

BMC Bioinform., 2010

2009

MODBASE, a database of annotated comparative protein structure models and associated resources.

Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali

Nucleic Acids Res., 2009

SARA: a server for function annotation of RNA structures.

Emidio Capriotti, Marc A. Martí-Renom

Nucleic Acids Res., 2009

ModLink+: improving fold recognition by using protein-protein interactions.

Oriol Fornes, Ramon Aragues, Jordi Espadaler, Marc A. Martí-Renom, Andrej Sali, Baldo Oliva

Bioinform., 2009

2008

Prediction of enzyme function by combining sequence similarity and protein interactions.

Jordi Espadaler, Narayanan Eswar, Enrique Querol, Francesc X. Avilés, Andrej Sali, Marc A. Martí-Renom, Baldomero Oliva

BMC Bioinform., 2008

RNA structure alignment by a unit-vector approach.

Emidio Capriotti, Marc A. Martí-Renom

Proceedings of the ECCB'08 Proceedings, 2008

2007

Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions.

Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Martí-Renom, Baldo Oliva

PLoS Comput. Biol., 2007

DBAli tools: mining the protein structure space.

Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali

Nucleic Acids Res., 2007

The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.

Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali

BMC Bioinform., 2007

2006

MODBASE: a database of annotated comparative protein structure models and associated resources.

Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali

Nucleic Acids Res., 2006

2004

MODBASE, a database of annotated comparative protein structure models, and associated resources.

Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali

Nucleic Acids Res., 2004

2003

EVA: evaluation of protein structure prediction servers.

Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost

Nucleic Acids Res., 2003

Tools for comparative protein structure modeling and analysis.

Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali

Nucleic Acids Res., 2003

ModView, visualization of multiple protein sequences and structures.

Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali

Bioinform., 2003

2001

Classification of protein disulphide-bridge topologies.

José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol

J. Comput. Aided Mol. Des., 2001

DBAli: a database of protein structure alignments.

Marc A. Martí-Renom, Valentin A. Ilyin, Andrej Sali

Bioinform., 2001

EVA: continuous automatic evaluation of protein structure prediction servers.

Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost

Bioinform., 2001

2000

Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2.

Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva

J. Comput. Aided Mol. Des., 2000

ASAP: analysis of peptide composition.

Xavier Serra-Hartmann, Xavier Rebordosa, Jaume Piñol, Enrique Querol, Marc A. Martí-Renom

Bioinform., 2000