Ananth Grama

According to our database1, Ananth Grama authored at least 145 papers between 1992 and 2019.

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2019
Federation in genomics pipelines: techniques and challenges.
Briefings in Bioinformatics, 2019

2018
A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Indexed Fast Network Proximity Querying.
PVLDB, 2018

VAYU: Accelerating stream processing applications through dynamic network-aware topology re-optimization.
J. Parallel Distrib. Comput., 2018

Frontiers of Science of Information: Shannon Meets Turing.
IEEE Computer, 2018

Low Rank Spectral Network Alignment.
Proceedings of the 2018 World Wide Web Conference on World Wide Web, 2018

TIMES: Temporal Information Maximally Extracted from Structures.
Proceedings of the 2018 World Wide Web Conference on World Wide Web, 2018

MODE: automated neural network model debugging via state differential analysis and input selection.
Proceedings of the 2018 ACM Joint Meeting on European Software Engineering Conference and Symposium on the Foundations of Software Engineering, 2018

Randomized Linear Algebra Approaches to Estimate the Von Neumann Entropy of Density Matrices.
Proceedings of the 2018 IEEE International Symposium on Information Theory, 2018

UBIS: Utilization-Aware Cluster Scheduling.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium, 2018

2017
Reactive Molecular Dynamics on Massively Parallel Heterogeneous Architectures.
IEEE Trans. Parallel Distrib. Syst., 2017

Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Triangular Alignment (TAME): A Tensor-Based Approach for Higher-Order Network Alignment.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Erasure Coding for Fault-Oblivious Linear System Solvers.
SIAM J. Scientific Computing, 2017

A Critical Survey of Deconvolution Methods for Separating Cell Types in Complex Tissues.
Proceedings of the IEEE, 2017

Principles and Applications of Science of Information.
Proceedings of the IEEE, 2017

Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads.
Proceedings of the 18th ACM/IFIP/USENIX Middleware Conference, Las Vegas, NV, USA, December 11, 2017

Recovery of vertex orderings in dynamic graphs.
Proceedings of the 2017 IEEE International Symposium on Information Theory, 2017

Introduction to HiCOMB Workshop.
Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

Distributed Fault Tolerant Linear System Solvers Based on Erasure Coding.
Proceedings of the 37th IEEE International Conference on Distributed Computing Systems, 2017

Suitability of NoSQL systems - Cassandra and ScyllaDB - For IoT workloads.
Proceedings of the 9th International Conference on Communication Systems and Networks, 2017

2016
Fundamental Bounds for Sequence Reconstruction From Nanopore Sequencers.
T-MBMC, 2016

The MG-RAST metagenomics database and portal in 2015.
Nucleic Acids Research, 2016

Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions.
BMC Systems Biology, 2016

A convex optimization approach for identification of human tissue-specific interactomes.
Bioinformatics, 2016

Efficient Processing of Network Proximity Queries via Chebyshev Acceleration.
Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2016

Context-Specific Recommendation System for Predicting Similar PubMed Articles.
Proceedings of the IEEE International Conference on Data Mining Workshops, 2016

Fast training on large genomics data using distributed Support Vector Machines.
Proceedings of the 8th International Conference on Communication Systems and Networks, 2016

Closing the Data Loop: An Integrated Open Access Analysis Platform for the MIMIC Database.
Proceedings of the Computing in Cardiology, CinC 2016, Vancouver, 2016

De novo identification of cell type hierarchy with application to compound marker detection.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2015
Scope and limitations of yeast as a model organism for studying human tissue-specific pathways.
BMC Systems Biology, 2015

Interpretable deep neural networks for enhancer prediction.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

An ensemble SVM model for the accurate prediction of non-canonical MicroRNA targets.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

Social ties and checkin sites: Connections and latent structures in Location Based Social Networks.
Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2015

2014
Surfing the Network for Ranking by Multidamping.
IEEE Trans. Knowl. Data Eng., 2014

Multiple network alignment on quantum computers.
Quantum Information Processing, 2014

A universal quantum circuit scheme for finding complex eigenvalues.
Quantum Information Processing, 2014

Parallel matrix algorithms.
Parallel Computing, 2014

Fast parallel algorithms for graph similarity and matching.
J. Parallel Distrib. Comput., 2014

Trends in big data analytics.
J. Parallel Distrib. Comput., 2014

PuReMD-GPU: A reactive molecular dynamics simulation package for GPUs.
J. Comput. Physics, 2014

2013
Concurrent programming constructs for parallel MPI applications - The MPI threads library.
The Journal of Supercomputing, 2013

Inferring the effective TOR-dependent network: a computational study in yeast.
BMC Systems Biology, 2013

Using hierarchical data mining to characterize performance of wireless system configurations.
Advances in Engineering Software, 2013

Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error.
Proceedings of the ACM Conference on Bioinformatics, 2013

M-Lock: Accelerating Distributed Transactions on Key-Value Stores through Dynamic Lock Localization.
Proceedings of the 2013 IEEE Sixth International Conference on Cloud Computing, Santa Clara, CA, USA, June 28, 2013

2012
Network Similarity Decomposition (NSD): A Fast and Scalable Approach to Network Alignment.
IEEE Trans. Knowl. Data Eng., 2012

Reactive Molecular Dynamics: Numerical Methods and Algorithmic Techniques.
SIAM J. Scientific Computing, 2012

Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques.
Parallel Computing, 2012

Role of Synthetic Genetic Interactions in Understanding Functional Interactions Among Pathways.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Parallel Numerical Computing from Illiac IV to Exascale - The Contributions of Ahmed H. Sameh.
Proceedings of the High-Performance Scientific Computing - Algorithms and Applications., 2012

2011
Asynchronous Iterative Algorithms.
Proceedings of the Encyclopedia of Parallel Computing, 2011

N-Body Computational Methods.
Proceedings of the Encyclopedia of Parallel Computing, 2011

TransMR: Data-Centric Programming Beyond Data Parallelism.
Proceedings of the 3rd USENIX Workshop on Hot Topics in Cloud Computing, 2011

2010
Weighted Matrix Ordering and Parallel Banded Preconditioners for Iterative Linear System Solvers.
SIAM J. Scientific Computing, 2010

Special issue on Parallel Matrix Algorithms and Applications.
Parallel Computing, 2010

Functional characterization and topological modularity of molecular interaction networks.
BMC Bioinformatics, 2010

Performance Models for the Spike Banded Linear System Solver.
Proceedings of the Ninth International Symposium on Parallel and Distributed Computing, 2010

Asynchronous Algorithms in MapReduce.
Proceedings of the 2010 IEEE International Conference on Cluster Computing, 2010

2009
Load Balancing for Parallel Optimization Techniques.
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009

Efficient tag detection in RFID systems.
J. Parallel Distrib. Comput., 2009

2008
Semantic indexing in structured peer-to-peer networks.
J. Parallel Distrib. Comput., 2008

Protocol Inference Using Static Path Profiles.
Proceedings of the Static Analysis, 15th International Symposium, 2008

PHALANX: a graph-theoretic framework for test case prioritization.
Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), 2008

Annotating Pathways of Interaction Networks.
Proceedings of the Biocomputing 2008, 2008

Scalable Data Collection in Sensor Networks.
Proceedings of the High Performance Computing, 2008

Functional coherence in domain interaction networks.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Scalability of Parallel Programs.
Proceedings of the Handbook of Parallel Computing - Models, Algorithms and Applications., 2007

Assessing Significance of Connectivity and Conservation in Protein Interaction Networks.
Journal of Computational Biology, 2007

Identifying Statistical Dependence in Genomic Sequences via Mutual Information Estimates.
EURASIP J. Bioinformatics and Systems Biology, 2007

Randomized leader election.
Distributed Computing, 2007

Static specification inference using predicate mining.
Proceedings of the ACM SIGPLAN 2007 Conference on Programming Language Design and Implementation, 2007

Functional annotation of regulatory pathways.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

Statistical Dependence in Biological Sequences.
Proceedings of the IEEE International Symposium on Information Theory, 2007

Path-Sensitive Inference of Function Precedence Protocols.
Proceedings of the 29th International Conference on Software Engineering (ICSE 2007), 2007

Building Verifiable Sensing Applications Through Temporal Logic Specification.
Proceedings of the Computational Science, 2007

Macroprogramming heterogeneous sensor networks using cosmos.
Proceedings of the 2007 EuroSys Conference, Lisbon, Portugal, March 21-23, 2007, 2007

2006
Redundancy and coverage detection in sensor networks.
TOSN, 2006

Nonorthogonal decomposition of binary matrices for bounded-error data compression and analysis.
ACM Trans. Math. Softw., 2006

Unstructured peer-to-peer networks for sharing processor cycles.
Parallel Computing, 2006

Locality in structured peer-to-peer networks.
J. Parallel Distrib. Comput., 2006

Pairwise Alignment of Protein Interaction Networks.
Journal of Computational Biology, 2006

Detecting Conserved Interaction Patterns in Biological Networks.
Journal of Computational Biology, 2006

Inferring functional information from domain co-evolution.
Bioinformatics, 2006

CONQUEST: A Coarse-Grained Algorithm for Constructing Summaries of Distributed Discrete Datasets.
Algorithmica, 2006

Assessing Significance of Connectivity and Conservation in Protein Interaction Networks.
Proceedings of the Research in Computational Molecular Biology, 2006

Sieve: A Tool for Automatically Detecting Variations Across Program Versions.
Proceedings of the 21st IEEE/ACM International Conference on Automated Software Engineering (ASE 2006), 2006

The Omni Macroprogramming Environment for Sensor Networks.
Proceedings of the Computational Science, 2006

Distributed Uniform Sampling in Unstructured Peer-to-Peer Networks.
Proceedings of the 39th Hawaii International International Conference on Systems Science (HICSS-39 2006), 2006

Trace-Based Memory Aliasing Across Program Versions.
Proceedings of the Fundamental Approaches to Software Engineering, 2006

2005
Compression, Clustering, and Pattern Discovery in Very High-Dimensional Discrete-Attribute Data Sets.
IEEE Trans. Knowl. Data Eng., 2005

Level compressed DAGs for lookup tables.
Computer Networks, 2005

Redundant reader elimination in RFID systems.
Proceedings of the Second Annual IEEE Communications Society Conference on Sensor, 2005

Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution.
Proceedings of the Research in Computational Molecular Biology, 2005

Randomized Protocols for Duplicate Elimination in Peer-to-Peer Storage Systems.
Proceedings of the Fifth IEEE International Conference on Peer-to-Peer Computing (P2P 2005), 31 August, 2005

Search with Probabilistic Guarantees in Unstructured Peer-to-Peer Networks.
Proceedings of the Fifth IEEE International Conference on Peer-to-Peer Computing (P2P 2005), 31 August, 2005

High-Fidelity Simulation of Large-Scale Structures.
Proceedings of the Computational Science, 2005

2004
Coverage preserving redundancy elimination in sensor networks.
Proceedings of the First Annual IEEE Communications Society Conference on Sensor and Ad Hoc Communications and Networks, 2004

Conquest: A Distributed Tool for Constructing Summaries of High-Dimensional Discrete Attribute Data Sets.
Proceedings of the Fourth SIAM International Conference on Data Mining, 2004

An efficient algorithm for detecting frequent subgraphs in biological networks.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

A public key algorithm for ad-hoc networks.
Proceedings of the 23rd IEEE International Performance Computing and Communications Conference, 2004

Impact of far-field interactions on performance of multipole-based preconditioners for sparse linear systems.
Proceedings of the 18th Annual International Conference on Supercomputing, 2004

Enhancing Locality in Structured Peer-to-Peer Networks.
Proceedings of the 10th International Conference on Parallel and Distributed Systems, 2004

Distributed and Dynamic Voronoi Overlays for Coverage Detection and Distributed Hash Tables in Ad-Hoc Networks.
Proceedings of the 10th International Conference on Parallel and Distributed Systems, 2004

A Secure Crediting Protocol for Hybrid Cellular and Ad-Hoc Networks.
Proceedings of the ICETE 2004, 2004

Extended Consistent Hashing: An Efficient Framework for Object Location.
Proceedings of the 24th International Conference on Distributed Computing Systems (ICDCS 2004), 2004

Model Reduction of Large-Scale Dynamical Systems.
Proceedings of the Computational Science, 2004

Parallel Performance of Hierarchical Multipole Algorithms for Inductance Extraction.
Proceedings of the High Performance Computing, 2004

Plethora: An EfficientWide-Area Storage System.
Proceedings of the High Performance Computing, 2004

Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
Multipole-based preconditioners for large sparse linear systems.
Parallel Computing, 2003

PROXIMUS: a framework for analyzing very high dimensional discrete-attributed datasets.
Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 24, 2003

Adaptive Data Structures for IP Lookups.
Proceedings of the Proceedings IEEE INFOCOM 2003, The 22nd Annual Joint Conference of the IEEE Computer and Communications Societies, San Franciso, CA, USA, March 30, 2003

Spectral LPM: An Optimal Locality-Preserving Mapping using the Spectral (not Fractal) Order.
Proceedings of the 19th International Conference on Data Engineering, 2003

An Efficient Protocol for Yao?s Millionaires? Problem.
Proceedings of the 36th Hawaii International Conference on System Sciences (HICSS-36 2003), 2003

An IP address based caching scheme for peer-to-peer networks.
Proceedings of the Global Telecommunications Conference, 2003

Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002
2D-pattern matching image and video compression: theory, algorithms, and experiments.
IEEE Trans. Image Processing, 2002

Algebraic Techniques for Analysis of Large Discrete-Valued Datasets.
Proceedings of the Principles of Data Mining and Knowledge Discovery, 2002

A Secure Protocol for Computing Dot-Products in Clustered and Distributed Environments.
Proceedings of the 31st International Conference on Parallel Processing (ICPP 2002), 2002

MOBY - A Mobile Peer-to-Peer Service and Data Network.
Proceedings of the 31st International Conference on Parallel Processing (ICPP 2002), 2002

Oceanus: A Distributed Web-Based Framework for Execution of Genetic Algorithms.
Proceedings of the Late Breaking papers at the Genetic and Evolutionary Computation Conference (GECCO-2002), 2002

Semi-discrete Matrix Transforms (SDD) for Image and Video Compression.
Proceedings of the 2002 Data Compression Conference (DCC 2002), 2002

2001
Compression of particle data from hierarchical approximate methods.
ACM Trans. Math. Softw., 2001

Privacy Risks in Recommender Systems.
IEEE Internet Computing, 2001

Mining scientific data.
Advances in Computers, 2001

Architecture Independent Analysis of Parallel Programs.
Proceedings of the Computational Science - ICCS 2001, 2001

Real-Time Decompression of Streaming Video Using Mobile Code.
Proceedings of the Data Compression Conference, 2001

2000
Summary Structures for Frequency Queries on Large Transaction Sets.
Proceedings of the Data Compression Conference, 2000

1999
State of the Art in Parallel Search Techniques for Discrete Optimization Problems.
IEEE Trans. Knowl. Data Eng., 1999

Data Mining: From Serendipity to Science - Guest Editors' Introduction.
IEEE Computer, 1999

Bounded-Error Compression of Particle Data from Hierarchical Approximate Methods.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1999

2D-Pattern Matching Image and Video Compression.
Proceedings of the Data Compression Conference, 1999

1998
Analyzing the Error Bounds of Multipole-Based Treecodes.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1998

Improving error bounds for multipole-based treecodes.
Proceedings of the 5th International Conference On High Performance Computing, 1998

1997
Role of Message-Passing in Performance Oriented Parallel Programming.
Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, 1997

1996
Parallel Hierarchical Solvers and Preconditioners for Boundary Element Methods.
Proceedings of the 1996 ACM/IEEE Conference on Supercomputing, 1996

1995
Parallel Search Algorithms for Discrete Optimization Problems.
INFORMS Journal on Computing, 1995

Parallel Matrix-Vector Product Using Approximate Hierarchical Methods.
Proceedings of the Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8, 1995, 1995

N-Body Simulations Using Message Passsing Parallel Computers.
Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995

1994
Scalable Load Balancing Techniques for Parallel Computers.
J. Parallel Distrib. Comput., 1994

Scalable parallel formulations of the Barnes-Hut method for n-body simulations.
Proceedings of the Proceedings Supercomputing '94, 1994

Introduction to Parallel Computing.
Benjamin/Cummings, ISBN: 0-8053-3170-0, 1994

1993
Isoefficiency: measuring the scalability of parallel algorithms and architectures.
IEEE P&DT, 1993

1992
Scalability Analysis of Partitioning Strategies for Finite Element Graphs: A Summary of Results.
Proceedings of the Proceedings Supercomputing '92, 1992


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