Hiruna Samarakoon

According to our database, Hiruna Samarakoon authored at least 5 papers between 2020 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2025

Leveraging basecaller's move table to generate a lightweight k-mer model for nanopore sequencing analysis.

Hiruna Samarakoon, Yuk Kei Wan, Sri Parameswaran, Jonathan Göke, Hasindu Gamaarachchi, Ira W. Deveson

Bioinform., 2025

2024

Interactive visualization of nanopore sequencing signal data with <i>Squigualiser</i>.

Hiruna Samarakoon, Kisaru Liyanage, James M. Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W. Deveson

Bioinform., 2024

Accelerating Chaining in Genomic Analysis Using RISC- V Custom Instructions.

Kisaru Liyanage, Hasindu Gamaarachchi, Hassaan Saadat, Tuo Li, Hiruna Samarakoon, Sri Parameswaran

Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2024

2023

Accelerated nanopore basecalling with SLOW5 data format.

Hiruna Samarakoon, James M. Ferguson, Hasindu Gamaarachchi, Ira W. Deveson

Bioinform., 2023

2020

GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis.

Hasindu Gamaarachchi, Wai Chun Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran

BMC Bioinform., 2020