Hasindu Gamaarachchi

According to our database, Hasindu Gamaarachchi authored at least 23 papers between 2014 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Realfreq: real-time base modification analysis for nanopore sequencing.

Suneth Samarasinghe, Ira W. Deveson, Hasindu Gamaarachchi

Bioinform., 2025

Leveraging basecaller's move table to generate a lightweight k-mer model for nanopore sequencing analysis.

Hiruna Samarakoon, Yuk Kei Wan, Sri Parameswaran, Jonathan Göke, Hasindu Gamaarachchi, Ira W. Deveson

Bioinform., 2025

2024

Interactive visualization of nanopore sequencing signal data with <i>Squigualiser</i>.

Hiruna Samarakoon, Kisaru Liyanage, James M. Ferguson, Sri Parameswaran, Hasindu Gamaarachchi, Ira W. Deveson

Bioinform., 2024

Accelerating Chaining in Genomic Analysis Using RISC- V Custom Instructions.

Kisaru Liyanage, Hasindu Gamaarachchi, Hassaan Saadat, Tuo Li, Hiruna Samarakoon, Sri Parameswaran

Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2024

SEA: Sign-Separated Accumulation Scheme for Resource-Efficient DNN Accelerators.

Jing Gong, Hassaan Saadat, Haris Javaid, Hasindu Gamaarachchi, David Taubman, Sri Parameswaran

Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2024

2023

DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing.

Anjana Senanayake, Hasindu Gamaarachchi, Damayanthi Herath, Roshan G. Ragel

BMC Bioinform., December, 2023

ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference.

Jing Gong, Hassaan Saadat, Hasindu Gamaarachchi, Haris Javaid, Xiaobo Sharon Hu, Sri Parameswaran

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., November, 2023

Cross Layer Design Using HW/SW Co-Design and HLS to Accelerate Chaining in Genomic Analysis.

Kisaru Liyanage, Hasindu Gamaarachchi, Roshan G. Ragel, Sri Parameswaran

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., September, 2023

Accelerated nanopore basecalling with SLOW5 data format.

Hiruna Samarakoon, James M. Ferguson, Hasindu Gamaarachchi, Ira W. Deveson

Bioinform., 2023

Invited: Algorithms and Architectures for Accelerating Long Read Sequence Analysis.

Hasindu Gamaarachchi, Kisaru Liyanage, Sri Parameswaran

Proceedings of the 60th ACM/IEEE Design Automation Conference, 2023

2022

Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices.

Po Jui Shih, Hassaan Saadat, Sri Parameswaran, Hasindu Gamaarachchi

CoRR, 2022

InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses.

James M. Ferguson, Hasindu Gamaarachchi, Thanh Nguyen, Alyne Gollon, Stephanie Tong, Chiara Aquilina-Reid, Rachel Bowen-James, Ira W. Deveson

Bioinform., 2022

2021

Computer Architecture-Aware Optimisation of DNA Analysis Systems.

Hasindu Gamaarachchi

CoRR, 2021

2020

Computer Architecture-Aware Optimisation of DNA Analysis Systems.

Hasindu Gamaarachchi

PhD thesis, 2020

Cache Friendly Optimisation of de Bruijn Graph Based Local Re-Assembly in Variant Calling.

Hasindu Gamaarachchi, Arash Bayat, Bruno Gaëta, Sri Parameswaran

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis.

Hasindu Gamaarachchi, Wai Chun Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran

BMC Bioinform., 2020

Seed-and-Vote based In-Memory Accelerator for DNA Read Mapping.

Ann Franchesca Laguna, Hasindu Gamaarachchi, Xunzhao Yin, Michael T. Niemier, Sri Parameswaran, Xiaobo Sharon Hu

Proceedings of the IEEE/ACM International Conference On Computer Aided Design, 2020

2019

SWARAM: Portable Energy and Cost Efficient Embedded System for Genomic Processing.

Ram Prasad Mohanty, Hasindu Gamaarachchi, Andrew J. Lambert, Sri Parameswaran

ACM Trans. Embed. Comput. Syst., 2019

2018

Power Analysis Based Side Channel Attack.

Hasindu Gamaarachchi, Harsha Ganegoda

CoRR, 2018

2015

Autonomic trust management in cloud-based and highly dynamic IoT applications.

Suneth Namal, Hasindu Gamaarachchi, Gyu Myoung Lee, Tai-Won Um

Proceedings of the 2015 ITU Kaleidoscope: Trust in the Information Society, 2015

Accelerating text-based plagiarism detection using GPUs.

M. A. C. Jiffriya, M. A. C. Akmal Jahan, Hasindu Gamaarachchi, Roshan G. Ragel

Proceedings of the 10th IEEE International Conference on Industrial and Information Systems, 2015

The A to Z of building a testbed for Power Analysis attacks.

Hasindu Gamaarachchi, Harsha Ganegoda, Roshan G. Ragel

Proceedings of the 10th IEEE International Conference on Industrial and Information Systems, 2015

2014

Accelerating Correlation Power Analysis Using Graphics Processing Units.

Hasindu Gamaarachchi, Roshan G. Ragel, Darshana Jayasinghe

CoRR, 2014