Ilya N. Shindyalov

According to our database, Ilya N. Shindyalov authored at least 20 papers between 1992 and 2006.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2006

DMAPS: a database of multiple alignments for protein structures.

Chittibabu Guda, Lipika R. Pal, Ilya N. Shindyalov

Nucleic Acids Res., 2006

2004

The Encyclopedia of Life Project: Grid Software and Deployment.

Wilfred W. Li, Robert W. Byrnes, Jim Hayes, Adam Birnbaum, Vicente M. Reyes, Atif Shahab, Coleman Mosley, Dmitry Pekurovsky, Greg B. Quinn, Ilya N. Shindyalov, Henri Casanova, Larry Ang, Fran Berman, Peter W. Arzberger, Mark A. Miller, Philip E. Bourne

New Gener. Comput., 2004

CE-MC: a multiple protein structure alignment server.

Chittibabu Guda, Sifang Lu, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov

Nucleic Acids Res., 2004

A New Scoring Function and Associated Statistical Significance for Structure Alignment by CE.

Yuting Jia, T. Gregory Dewey, Ilya N. Shindyalov, Philip E. Bourne

J. Comput. Biol., 2004

A case study of high-throughput biological data processing on parallel platforms.

Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne

Bioinform., 2004

The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures.

Philip E. Bourne, C. K. J. Allerston, Werner G. Krebs, Wilfred W. Li, Ilya N. Shindyalov, Adam Godzik, Iddo Friedberg, Tong Liu, David L. Wild, Seungwoo Hwang, Zoubin Ghahramani, Li Chen, John D. Westbrook

Proceedings of the Biocomputing 2004, 2004

2003

PDP: protein domain parser.

Nickolai Alexandrov, Ilya N. Shindyalov

Bioinform., 2003

Parallel Processing on Large Redudant Biological Data Sets: Protein Structures Classification with CEPAR.

Dmitry Pekurovsky, Ilya N. Shindyalov, Philip E. Bourne

Proceedings of the Parallel Computing: Software Technology, 2003

2002

CKAAPs DB: a Conserved Key Amino Acid Positions DataBase.

Wilfred W. Li, Boojala V. B. Reddy, John G. Tate, Ilya N. Shindyalov, Philip E. Bourne

Nucleic Acids Res., 2002

Building an automated classification of DNA-binding protein domains.

Julia V. Ponomarenko, Philip E. Bourne, Ilya N. Shindyalov

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.

Ilya N. Shindyalov, Philip E. Bourne

Nucleic Acids Res., 2001

CKAAPs DB: a conserved key amino acid positions database.

Wilfred W. Li, Boojala V. B. Reddy, Ilya N. Shindyalov, Philip E. Bourne

Nucleic Acids Res., 2001

A New Algorithm for the Alignment of Multiple Protein Structures Using Monte Carlo Optimization.

Chittibabu Guda, Eric D. Scheeff, Philip E. Bourne, Ilya N. Shindyalov

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

2000

The Protein Data Bank.

Helen M. Berman, John D. Westbrook, Zukang Feng, Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne

Nucleic Acids Res., 2000

1997

Protein data representation and query using optimized data decomposition.

Ilya N. Shindyalov, Philip E. Bourne

Comput. Appl. Biosci., 1997

1995

Identification of CDNA Sequences by Specific Oligonucleotide Sets - A Computer Tool and Application.

Nikolay A. Kolchanov, Oleg V. Vishnevsky, Vladimir N. Babenko, Alexander E. Kel, Ilya N. Shindyalov

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

Design and use of a software framework to obtain information derived from macromolecular structure data.

Ilya N. Shindyalov, Weider Chang, J. A. Cooper, Philip E. Bourne

Proceedings of the 28th Annual Hawaii International Conference on System Sciences (HICSS-28), 1995

1994

Design and application of PDBlib, a C++ macromolecular class library.

Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne

Comput. Appl. Biosci., 1994

Design and Application of a C++ Macromolecular Class Library.

Weider Chang, Ilya N. Shindyalov, Calton Pu, Philip E. Bourne

Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, 1994

1992

Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices.

Victor B. Strelets, Ilya N. Shindyalov, Nikolay A. Kolchanov, Luciano Milanesi

Comput. Appl. Biosci., 1992