Adam Godzik
Orcid: 0000-0002-2425-852XAffiliations:
- University of California, Riverside, CA, USA
- Sanford-Burnham Medical Research Institute, La Jolla, CA, USA
According to our database1,
Adam Godzik
authored at least 66 papers
between 1993 and 2021.
Collaborative distances:
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Bibliography
2021
The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.
PLoS Comput. Biol., 2021
2020
Nucleic Acids Res., 2020
Bioinform., 2020
2019
Cancer3D 2.0: interactive analysis of 3D patterns of cancer mutations in cancer subsets.
Nucleic Acids Res., 2019
2016
Bioinform., 2016
2015
PROPER: Performance visualization for optimizing and comparing ranking classifiers in MATLAB.
Source Code Biol. Medicine, 2015
PLoS Comput. Biol., 2015
Analysis of Individual Protein Regions Provides Novel Insights on Cancer Pharmacogenomics.
PLoS Comput. Biol., 2015
Nucleic Acids Res., 2015
Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions.
BMC Bioinform., 2015
AIDA: <i>ab initio</i> domain assembly for automated multi-domain protein structure prediction and domain-domain interaction prediction.
Bioinform., 2015
2014
Nucleic Acids Res., 2014
Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase.
BMC Bioinform., 2014
Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of Glycoside Hydrolase.
BMC Bioinform., 2014
ConSole: using modularity of contact maps to locate Solenoid domains in protein structures.
BMC Bioinform., 2014
Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.
BMC Bioinform., 2014
FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking.
Bioinform., 2014
Bioinform., 2014
2013
Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.
BMC Bioinform., 2013
Algorithms Mol. Biol., 2013
2012
This <i>Déjà Vu</i> Feeling - Analysis of Multidomain Protein Evolution in Eukaryotic Genomes.
PLoS Comput. Biol., 2012
2011
The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities.
PLoS Comput. Biol., 2011
2010
Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families.
PLoS Comput. Biol., 2010
BMC Bioinform., 2010
Bioinform., 2010
2009
Nucleic Acids Res., 2009
2008
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model.
BMC Bioinform., 2008
2007
Bioinform., 2007
TOM - Task and Object Management for Grid Clusters.
Proceedings of the 2007 International Conference on Grid Computing & Applications, 2007
2006
Flexible Structural Neighborhood - a database of protein structural similarities and alignments.
Nucleic Acids Res., 2006
BMC Bioinform., 2006
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
Bioinform., 2006
Bioinform., 2006
Proceedings of the Biocomputing 2006, 2006
2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
2004
FATCAT: a web server for flexible structure comparison and structure similarity searching.
Nucleic Acids Res., 2004
BMC Bioinform., 2004
The Status of Structural Genomics Defined Through the Analysis of Current Targets and Structures.
Proceedings of the Biocomputing 2004, 2004
2003
Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.
BMC Bioinform., 2003
Flexible structure alignment by chaining aligned fragment pairs allowing twists.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003
2002
Tolerating some redundancy significantly speeds up clustering of large protein databases.
Bioinform., 2002
Proceedings of the 1st International Symposium on 3D Data Processing Visualization and Transmission (3DPVT 2002), 2002
2001
Clustering of highly homologous sequences to reduce the size of large protein databases.
Bioinform., 2001
2000
Comput. Chem., 2000
Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology.
Bioinform., 2000
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000
1994
Flexible algorithm for direct multiple alignment of protein structures and sequences.
Comput. Appl. Biosci., 1994
1993
J. Comput. Chem., 1993
J. Comput. Aided Mol. Des., 1993