Christian von Mering

According to our database1, Christian von Mering authored at least 35 papers between 2003 and 2021.

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Bibliography

2021
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.
Nucleic Acids Res., 2021

2020
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
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Nat., 2020

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.
Bioinform., 2020

2019
STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Nucleic Acids Res., 2019

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Nucleic Acids Res., 2019

Tree reconciliation combined with subsampling improves large scale inference of orthologous group hierarchies.
BMC Bioinform., 2019

2017
The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res., 2017

MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis.
Bioinform., 2017

RAIN: RNA-protein Association and Interaction Networks.
Database J. Biol. Databases Curation, 2017

2016
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
Nucleic Acids Res., 2016

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res., 2016

SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles.
Bioinform., 2016

2015
STRING v10: protein-protein interaction networks, integrated over the tree of life.
Nucleic Acids Res., 2015

2014
Ecological Consistency of SSU rRNA-Based Operational Taxonomic Units at a Global Scale.
PLoS Comput. Biol., 2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res., 2014

eggNOG v4.0: nested orthology inference across 3686 organisms.
Nucleic Acids Res., 2014

STITCH 4: integration of protein-chemical interactions with user data.
Nucleic Acids Res., 2014

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences.
Bioinform., 2014

2013
STRING v9.1: protein-protein interaction networks, with increased coverage and integration.
Nucleic Acids Res., 2013

Chromothripsis-like patterns are recurring, but heterogeneously distributed features in cancer: A survey of 22, 347 genomic copy number profiles.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic Acids Res., 2012

STITCH 3: zooming in on protein-chemical interactions.
Nucleic Acids Res., 2012

2011
Cell-Sorting at the A/P Boundary in the <i>Drosophila</i> Wing Primordium: A Computational Model to Consolidate Observed Non-Local Effects of Hh Signaling.
PLoS Comput. Biol., 2011

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic Acids Res., 2011

2010
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic Acids Res., 2010

STITCH 2: an interaction network database for small molecules and proteins.
Nucleic Acids Res., 2010

2009
STRING 8 - a global view on proteins and their functional interactions in 630 organisms.
Nucleic Acids Res., 2009

2008
STITCH: interaction networks of chemicals and proteins.
Nucleic Acids Res., 2008

eggNOG: automated construction and annotation of orthologous groups of genes.
Nucleic Acids Res., 2008

2007
STRING 7 - recent developments in the integration and prediction of protein interactions.
Nucleic Acids Res., 2007

2005
STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
Nucleic Acids Res., 2005

2004
ArrayProspector: a web resource of functional associations inferred from microarray expression data.
Nucleic Acids Res., 2004

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinform., 2004

2003
STRING: a database of predicted functional associations between proteins.
Nucleic Acids Res., 2003

A comprehensive set of protein complexes in yeast: mining large scale protein-protein interaction screens.
Bioinform., 2003


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