Michael Kuhn

Orcid: 0000-0002-2841-872X

Affiliations:
  • European Molecular Biology Laboratory (EMBL), Heidelberg, Germany


According to our database1, Michael Kuhn authored at least 31 papers between 2007 and 2023.

Collaborative distances:

Timeline

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Bibliography

2023
proGenomes3: approaching one million accurately and consistently annotated high-quality prokaryotic genomes.
Nucleic Acids Res., January, 2023

2020
Identification of metabolites from tandem mass spectra with a machine learning approach utilizing structural features.
Bioinform., 2020

2018
Extensive impact of non-antibiotic drugs on human gut bacteria.
Nat., 2018

2017
The UCSC Genome Browser database: 2017 update.
Nucleic Acids Res., 2017

The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Nucleic Acids Res., 2017

2016
STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data.
Nucleic Acids Res., 2016

The SIDER database of drugs and side effects.
Nucleic Acids Res., 2016

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.
Nucleic Acids Res., 2016

2015
STRING v10: protein-protein interaction networks, integrated over the tree of life.
Nucleic Acids Res., 2015

2014
Coiled-Coil Proteins Facilitated the Functional Expansion of the Centrosome.
PLoS Comput. Biol., 2014

eggNOG v4.0: nested orthology inference across 3686 organisms.
Nucleic Acids Res., 2014

STITCH 4: integration of protein-chemical interactions with user data.
Nucleic Acids Res., 2014

2013
STRING v9.1: protein-protein interaction networks, with increased coverage and integration.
Nucleic Acids Res., 2013

2012
eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges.
Nucleic Acids Res., 2012

STITCH 3: zooming in on protein-chemical interactions.
Nucleic Acids Res., 2012

2011
Prediction of Drug Combinations by Integrating Molecular and Pharmacological Data.
PLoS Comput. Biol., 2011

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored.
Nucleic Acids Res., 2011

2010
Reflect: A practical approach to web semantics.
J. Web Semant., 2010

Live Coverage of Scientific Conferences Using Web Technologies.
PLoS Comput. Biol., 2010

Live Coverage of Intelligent Systems for Molecular Biology/European Conference on Computational Biology (ISMB/ECCB) 2009.
PLoS Comput. Biol., 2010

Drug-Induced Regulation of Target Expression.
PLoS Comput. Biol., 2010

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations.
Nucleic Acids Res., 2010

STITCH 2: an interaction network database for small molecules and proteins.
Nucleic Acids Res., 2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.
J. Biomed. Semant., 2010

2009
Microblogging the ISMB: A New Approach to Conference Reporting.
PLoS Comput. Biol., 2009

STRING 8 - a global view on proteins and their functional interactions in 630 organisms.
Nucleic Acids Res., 2009

OnTheFly: a tool for automated document-based text annotation, data linking and network generation.
Bioinform., 2009

2008
STITCH: interaction networks of chemicals and proteins.
Nucleic Acids Res., 2008

eggNOG: automated construction and annotation of orthologous groups of genes.
Nucleic Acids Res., 2008

SuperTarget and Matador: resources for exploring drug-target relationships.
Nucleic Acids Res., 2008

2007
STRING 7 - recent developments in the integration and prediction of protein interactions.
Nucleic Acids Res., 2007


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