Jeremy J. Yang

According to our database, Jeremy J. Yang authored at least 23 papers between 2013 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2026

KG2ML: integrating knowledge graphs and positive unlabeled learning for identifying disease-associated genes.

Praveen Kumar, Vincent T. Metzger, Swastika T. Purushotham, Priyansh Kedia, Cristian Bologa, Christophe G. Lambert, Jeremy J. Yang

Frontiers Bioinform., 2026

2025

Detecting Opioid Use Disorder in Health Claims Data With Positive Unlabeled Learning.

Praveen Kumar, Fariha Moomtaheen, Scott A. Malec, Jeremy J. Yang, Cristian Bologa, Kristan Alexander Schneider, Yiliang Zhu, Mauricio Tohen, Gerardo Villarreal, Douglas J. Perkins, Elliot M. Fielstein, Sharon E. Davis, Michael E. Matheny, Christophe G. Lambert

IEEE J. Biomed. Health Informatics, February, 2025

Badapple 2.0: An Empirical Predictor of Compound Promiscuity, Updated, Modernized, and Enhanced for Explainability.

John A. Ringer, Christophe G. Lambert, Steven B. Bradfute, Cristian Bologa, Jeremy J. Yang

J. Chem. Inf. Model., 2025

TICTAC: target illumination clinical trial analytics with cheminformatics.

Jeremiah I. Abok, Jeremy S. Edwards, Jeremy J. Yang

Frontiers Bioinform., 2025

2023

Pharos 2023: an integrated resource for the understudied human proteome.

Keith J. Kelleher, Timothy Sheils, Stephen L. Mathias, Jeremy J. Yang, Vincent T. Metzger, Vishal B. Siramshetty, Dac-Trung Nguyen, Lars Juhl Jensen, Dusica Vidovic, Stephan C. Schürer, Jayme Holmes, Karlie R. Sharma, Ajay Pillai, Cristian Bologa, Jeremy S. Edwards, Ewy A. Mathé, Tudor I. Oprea

Nucleic Acids Res., January, 2023

DrugCentral 2023 extends human clinical data and integrates veterinary drugs.

Sorin I. Avram, Thomas B. Wilson, Ramona Curpan, Liliana Halip, Ana Borota, Alina Bora, Cristian Bologa, Jayme Holmes, Jeffrey Knockel, Jeremy J. Yang, Tudor I. Oprea

Nucleic Acids Res., January, 2023

2022

Reply to issues about entitymetrics and paper-entity citation network.

Qi Yu, Qi Wang, Yafei Zhang, Chongyan Chen, Hyeyoung Ryu, Namu Park, Jae-Eun Baek, Keyuan Li, Yifei Wu, Daifeng Li, Jian Xu, Meijun Liu, Jeremy J. Yang, Chenwei Zhang, Chao Lu, Peng Zhang, Xin Li, Baitong Chen, Islam Akef Ebeid, Julia Fensel, Chao Min, Yujia Zhai, Min Song, Ying Ding, Yi Bu

Scientometrics, 2022

Knowledge graph analytics platform with LINCS and IDG for Parkinson's disease target illumination.

Jeremy J. Yang, Christopher Gessner, Joel Duerksen, Daniel Biber, Jessica L. Binder, Murat Ozturk, Brian Foote, Robin McEntire, Kyle Stirling, Ying Ding, David J. Wild

BMC Bioinform., 2022

2021

Analyzing knowledge entities about COVID-19 using entitymetrics.

Qi Yu, Qi Wang, Yafei Zhang, Chongyan Chen, Hyeyoung Ryu, Namu Park, Jae-Eun Baek, Keyuan Li, Yifei Wu, Daifeng Li, Jian Xu, Meijun Liu, Jeremy J. Yang, Chenwei Zhang, Chao Lu, Peng Zhang, Xin Li, Baitong Chen, Islam Akef Ebeid, Julia Fensel, Chao Min, Yujia Zhai, Min Song, Ying Ding, Yi Bu

Scientometrics, 2021

A machine learning platform to estimate anti-SARS-CoV-2 activities.

Govinda B. Kc, Giovanni Bocci, Srijan Verma, Md Mahmudulla Hassan, Jayme Holmes, Jeremy J. Yang, Suman Sirimulla, Tudor I. Oprea

Nat. Mach. Intell., 2021

TCRD and Pharos 2021: mining the human proteome for disease biology.

Timothy Sheils, Stephen L. Mathias, Keith J. Kelleher, Vishal B. Siramshetty, Dac-Trung Nguyen, Cristian Bologa, Lars Juhl Jensen, Dusica Vidovic, Amar Koleti, Stephan C. Schürer, Anna Waller, Jeremy J. Yang, Jayme Holmes, Giovanni Bocci, Noel Southall, Poorva Dharkar, Ewy A. Mathé, Anton Simeonov, Tudor I. Oprea

Nucleic Acids Res., 2021

DrugCentral 2021 supports drug discovery and repositioning.

Sorin I. Avram, Cristian Bologa, Jayme Holmes, Giovanni Bocci, Thomas B. Wilson, Dac-Trung Nguyen, Ramona Curpan, Liliana Halip, Alina Bora, Jeremy J. Yang, Jeffrey Knockel, Suman Sirimulla, Oleg Ursu, Tudor I. Oprea

Nucleic Acids Res., 2021

TIGA: target illumination GWAS analytics.

Jeremy J. Yang, Dhouha Grissa, Christophe G. Lambert, Cristian Bologa, Stephen L. Mathias, Anna Waller, David J. Wild, Lars Juhl Jensen, Tudor I. Oprea

Bioinform., 2021

2019

DrugCentral 2018: an update.

Oleg Ursu, Jayme Holmes, Cristian Bologa, Jeremy J. Yang, Stephen L. Mathias, Vasileios Stathias, Dac-Trung Nguyen, Stephan C. Schürer, Tudor I. Oprea

Nucleic Acids Res., 2019

edge2vec: Representation learning using edge semantics for biomedical knowledge discovery.

Zheng Gao, Gang Fu, Chunping Ouyang, Satoshi Tsutsui, Xiaozhong Liu, Jeremy J. Yang, Christopher Gessner, Brian Foote, David J. Wild, Ying Ding, Qi Yu

BMC Bioinform., 2019

2017

DrugCentral: online drug compendium.

Oleg Ursu, Jayme Holmes, Jeffrey Knockel, Cristian Bologa, Jeremy J. Yang, Stephen L. Mathias, Stuart J. Nelson, Tudor I. Oprea

Nucleic Acids Res., 2017

Pharos: Collating protein information to shed light on the druggable genome.

Dac-Trung Nguyen, Stephen L. Mathias, Cristian Bologa, Søren Brunak, Nicolas F. Fernandez, Anna Gaulton, Anne Hersey, Jayme Holmes, Lars Juhl Jensen, Anneli Karlsson, Guixia Liu, Avi Ma'ayan, Geetha Mandava, Subramani Mani, Saurabh Mehta, John P. Overington, Juhee Patel, Andrew D. Rouillard, Stephan C. Schürer, Timothy Sheils, Anton Simeonov, Larry A. Sklar, Noel Southall, Oleg Ursu, Dusica Vidovic, Anna Waller, Jeremy J. Yang, Ajit Jadhav, Tudor I. Oprea, Rajarshi Guha

Nucleic Acids Res., 2017

Formalizing drug indications on the road to therapeutic intent.

Stuart J. Nelson, Tudor I. Oprea, Oleg Ursu, Cristian Bologa, Amrapali Zaveri, Jayme Holmes, Jeremy J. Yang, Stephen L. Mathias, Subramani Mani, Mark S. Tuttle, Michel Dumontier

J. Am. Medical Informatics Assoc., 2017

Drug target ontology to classify and integrate drug discovery data.

Yu Lin, Saurabh Mehta, Hande Küçük-McGinty, John Paul Turner, Dusica Vidovic, Michele Forlin, Amar Koleti, Dac-Trung Nguyen, Lars Juhl Jensen, Rajarshi Guha, Stephen L. Mathias, Oleg Ursu, Vasileios Stathias, Jianbin Duan, Nooshin Nabizadeh, Caty Chung, Christopher Mader, Ubbo Visser, Jeremy J. Yang, Cristian Bologa, Tudor I. Oprea, Stephan C. Schürer

J. Biomed. Semant., 2017

PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets.

Marija Djokic-Petrovic, Vladimir M. Cvjetkovic, Jeremy J. Yang, Marko Zivanovic, David J. Wild

J. Biomed. Semant., 2017

TIN-X: target importance and novelty explorer.

Daniel Cannon, Jeremy J. Yang, Stephen L. Mathias, Oleg Ursu, Subramani Mani, Anna Waller, Stephan C. Schürer, Lars Juhl Jensen, Larry A. Sklar, Cristian Bologa, Tudor I. Oprea

Bioinform., 2017

2016

Badapple: promiscuity patterns from noisy evidence.

Jeremy J. Yang, Oleg Ursu, Christopher A. Lipinski, Larry A. Sklar, Tudor I. Oprea, Cristian Bologa

J. Cheminformatics, 2016

2013

The CARLSBAD Database: A Confederated Database of Chemical Bioactivities.

Stephen L. Mathias, Jarrett Hines-Kay, Jeremy J. Yang, Gergely Zahoránszky-Köhalmi, Cristian Bologa, Oleg Ursu, Tudor I. Oprea

Database J. Biol. Databases Curation, 2013