Guixia Liu

Orcid: 0000-0001-9648-844X

According to our database1, Guixia Liu authored at least 81 papers between 2005 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
DBPP-Predictor: a novel strategy for prediction of chemical drug-likeness based on property profiles.
J. Cheminformatics, December, 2024

Network-Based Methods and Their Applications in Drug Discovery.
J. Chem. Inf. Model., January, 2024

mtADENet: A novel interpretable method integrating multiple types of network-based inference approaches for prediction of adverse drug events.
Comput. Biol. Medicine, January, 2024

XGraphCDS: An explainable deep learning model for predicting drug sensitivity from gene pathways and chemical structures.
Comput. Biol. Medicine, January, 2024

2023
Chemical rules for optimization of chemical mutagenicity via matched molecular pairs analysis and machine learning methods.
J. Cheminformatics, December, 2023

A seed expansion-based method to identify essential proteins by integrating protein-protein interaction sub-networks and multiple biological characteristics.
BMC Bioinform., December, 2023

Identification of Robust Antibiotic Subgroups by Integrating Multi-Species Drug-Drug Interactions.
J. Chem. Inf. Model., August, 2023

Integrating multi-source drug information to cluster drug-drug interaction network.
Comput. Biol. Medicine, August, 2023

Pharmaceutical Cocrystal Discovery via 3D-SMINBR: A New Network Recommendation Tool Augmented by 3D Molecular Conformations.
J. Chem. Inf. Model., July, 2023

Prediction of Sites of Metabolism of CYP3A4 Substrates Utilizing Docking-Derived Geometric Features.
J. Chem. Inf. Model., July, 2023

MFSJMI: Multi-label feature selection considering join mutual information and interaction weight.
Pattern Recognit., June, 2023

Investigation of Anti-Alzheimer's Mechanisms of Sarsasapogenin Derivatives by Network-Based Combining Structure-Based Methods.
J. Chem. Inf. Model., May, 2023

ACP-MLC: A two-level prediction engine for identification of anticancer peptides and multi-label classification of their functional types.
Comput. Biol. Medicine, May, 2023

Multi-label feature selection via redundancy of the selected feature set.
Appl. Intell., May, 2023

SEN-FCB: an unsupervised twinning neural network for image registration.
Appl. Intell., May, 2023

Identification of vital chemical information via visualization of graph neural networks.
Briefings Bioinform., January, 2023

AADB: A Manually Collected Database for Combinations of Antibiotics With Adjuvants.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

RFR-WWANet: Weighted Window Attention-Based Recovery Feature Resolution Network for Unsupervised Image Registration.
CoRR, 2023

2022
Symmetric transformer-based network for unsupervised image registration.
Knowl. Based Syst., 2022

Mechanistic Studies on the Stereoselectivity of FFAR1 Modulators.
J. Chem. Inf. Model., 2022

IDL-PPBopt: A Strategy for Prediction and Optimization of Human Plasma Protein Binding of Compounds via an Interpretable Deep Learning Method.
J. Chem. Inf. Model., 2022

Discovery of New Estrogen-Related Receptor α Agonists via a Combination Strategy Based on Shape Screening and Ensemble Docking.
J. Chem. Inf. Model., 2022

A multitask GNN-based interpretable model for discovery of selective JAK inhibitors.
J. Cheminformatics, 2022

In silico prediction of UGT-mediated metabolism in drug-like molecules via graph neural network.
J. Cheminformatics, 2022

ADENet: a novel network-based inference method for prediction of drug adverse events.
Briefings Bioinform., 2022

Profiling prediction of nuclear receptor modulators with multi-task deep learning methods: toward the virtual screening.
Briefings Bioinform., 2022

Computational models, databases and tools for antibiotic combinations.
Briefings Bioinform., 2022

TD-Net: unsupervised medical image registration network based on Transformer and CNN.
Appl. Intell., 2022

2021
Multi-label feature selection considering label supplementation.
Pattern Recognit., 2021

SMINBR: An Integrated Network and Chemoinformatics Tool Specialized for Prediction of Two-Component Crystal Formation.
J. Chem. Inf. Model., 2021

Discovery of Natural Products Targeting NQO1 via an Approach Combining Network-Based Inference and Identification of Privileged Substructures.
J. Chem. Inf. Model., 2021

Pathway-Based Drug Repurposing with DPNetinfer: A Method to Predict Drug-Pathway Associations via Network-Based Approaches.
J. Chem. Inf. Model., 2021

MetaADEDB 2.0: a comprehensive database on adverse drug events.
Bioinform., 2021

Drug repositioning by prediction of drug's anatomical therapeutic chemical code via network-based inference approaches.
Briefings Bioinform., 2021

2020
NetInfer: A Web Server for Prediction of Targets and Therapeutic and Adverse Effects via Network-Based Inference Methods.
J. Chem. Inf. Model., 2020

Computational Insights into Molecular Activation and Positive Cooperative Mechanisms of FFAR1 Modulators.
J. Chem. Inf. Model., 2020

Computational Insight into the Allosteric Activation Mechanism of Farnesoid X Receptor.
J. Chem. Inf. Model., 2020

A novel graph clustering method with a greedy heuristic search algorithm for mining protein complexes from dynamic and static PPI networks.
Inf. Sci., 2020

SHEIB-AGM: A Novel Stochastic Approach for Detecting High-Order Epistatic Interactions Using Bioinformation With Automatic Gene Matrix in Genome-Wide Association Studies.
IEEE Access, 2020

A Novel Prediction Method for ATP-Binding Sites From Protein Primary Sequences Based on Fusion of Deep Convolutional Neural Network and Ensemble Learning.
IEEE Access, 2020

2019
Insights into the antineoplastic mechanism of Chelidonium majus via systems pharmacology approach.
Quant. Biol., 2019

Distinguishing two types of labels for multi-label feature selection.
Pattern Recognit., 2019

In Silico Prediction of Endocrine Disrupting Chemicals Using Single-Label and Multilabel Models.
J. Chem. Inf. Model., 2019

Correction to "admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties".
J. Chem. Inf. Model., 2019

Computational Prediction of Site of Metabolism for UGT-Catalyzed Reactions.
J. Chem. Inf. Model., 2019

Identifying protein complexes based on an edge weight algorithm and core-attachment structure.
BMC Bioinform., 2019

admetSAR 2.0: web-service for prediction and optimization of chemical ADMET properties.
Bioinform., 2019

A Novel Prediction Method of ATP Binding Residues from Protein Primary Sequence.
Proceedings of the Advances in Neural Networks - ISNN 2019, 2019

2018
ADMETopt: A Web Server for ADMET Optimization in Drug Design via Scaffold Hopping.
J. Chem. Inf. Model., 2018

Multiclassification Prediction of Enzymatic Reactions for Oxidoreductases and Hydrolases Using Reaction Fingerprints and Machine Learning Methods.
J. Chem. Inf. Model., 2018

Predicting overlapping protein complexes based on core-attachment and a local modularity structure.
BMC Bioinform., 2018

MGOGP: a gene module-based heuristic algorithm for cancer-related gene prioritization.
BMC Bioinform., 2018

Feature selection considering weighted relevancy.
Appl. Intell., 2018

2017
Pharos: Collating protein information to shed light on the druggable genome.
Nucleic Acids Res., 2017

Computational Investigation of Ligand Binding to the Peripheral Site in CYP3A4: Conformational Dynamics and Inhibitor Discovery.
J. Chem. Inf. Model., 2017

SDTNBI: an integrated network and chemoinformatics tool for systematic prediction of drug-target interactions and drug repositioning.
Briefings Bioinform., 2017

A new method for disease-related gene prioritization.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016
A new approach to detect epistasis utilizing parallel implementation of ant colony optimization by MapReduce framework.
Int. J. Comput. Math., 2016

2014
<i>In Silico</i> Prediction of Chemical Acute Oral Toxicity Using Multi-Classification Methods.
J. Chem. Inf. Model., 2014

A New Epistasis Detecting Algorithm Based on Ant Colony Optimization.
Proceedings of the International Conference on Internet Multimedia Computing and Service, 2014

2013
Prediction of Polypharmacological Profiles of Drugs by the Integration of Chemical, Side Effect, and Therapeutic Space.
J. Chem. Inf. Model., 2013

CChi: An efficient cloud epistasis test model in human genome wide association studies.
Proceedings of the 6th International Conference on Biomedical Engineering and Informatics, 2013

2012
Prediction of Drug-Target Interactions and Drug Repositioning via Network-Based Inference.
PLoS Comput. Biol., 2012

In silico Prediction of Chemical Ames Mutagenicity.
J. Chem. Inf. Model., 2012

Unbinding Pathways of GW4064 from Human Farnesoid X Receptor As Revealed by Molecular Dynamics Simulations.
J. Chem. Inf. Model., 2012

Performance Evaluation of 2D Fingerprint and 3D Shape Similarity Methods in Virtual Screening.
J. Chem. Inf. Model., 2012

admetSAR: A Comprehensive Source and Free Tool for Assessment of Chemical ADMET Properties.
J. Chem. Inf. Model., 2012

In Silico Assessment of Chemical Biodegradability.
J. Chem. Inf. Model., 2012

2011
Insights into Molecular Basis of Cytochrome P450 Inhibitory Promiscuity of Compounds.
J. Chem. Inf. Model., 2011

Classification of Cytochrome P450 Inhibitors and Noninhibitors Using Combined Classifiers.
J. Chem. Inf. Model., 2011

2010
Accuracy Assessment of Protein-Based Docking Programs against RNA Targets.
J. Chem. Inf. Model., 2010

Gravitation field algorithm and its application in gene cluster.
Algorithms Mol. Biol., 2010

Gene Regulatory Network Reconstruction with Multiple Dataset Fusion and Differential Equation.
Proceedings of the Fifth International Conference on Frontier of Computer Science and Technology, 2010

2009
Improved Clonal Selection Algorithm for Protein Contact Map Prediction.
Proceedings of the International Conference on Networked Computing and Advanced Information Management, 2009

Signaling Pathway Reconstruction by Fusing Priori Knowledge.
Proceedings of the Emerging Intelligent Computing Technology and Applications, 2009

2008
Research on Signaling Pathway Reconstruction Based on HMM.
Proceedings of the 9th International Conference for Young Computer Scientists, 2008

2006
Prediction of Contact Maps Using Modified Transiently Chaotic Neural Network.
Proceedings of the Advances in Neural Networks - ISNN 2006, Third International Symposium on Neural Networks, Chengdu, China, May 28, 2006

Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory.
Proceedings of the Artificial Intelligence Applications and Innovations, 2006

Feature Selection for Microarray Data Analysis Using Mutual Information and Rough Set Theory.
Proceedings of the Computational Intelligence and Bioinformatics, 2006

2005
Identification of Transcription Factor Binding Sites Using Hybrid Particle Swarm Optimization.
Proceedings of the Rough Sets, 2005

Prediction of Contact Maps in Proteins Based on Recurrent Neural Network with Bias Units.
Proceedings of the Advances in Neural Networks - ISNN 2005, Second International Symposium on Neural Networks, Chongqing, China, May 30, 2005


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