Joel S. Bader

According to our database, Joel S. Bader authored at least 25 papers between 2003 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2025

Prioritization of causal genes from genome-wide association studies by Bayesian data integration across loci.

Zeinab Mousavi, Marios Arvanitis, Thuyvy Duong, Jennifer A. Brody, Alexis Battle, Nona Sotoodehnia, Ali Shojaie, Dan E. Arking, Joel S. Bader

PLoS Comput. Biol., 2025

2024

Prioritizing drug targets by perturbing biological network response functions.

Matthew C. Perrone, Michael G. Lerner, Matthew Dunworth, Andrew J. Ewald, Joel S. Bader

PLoS Comput. Biol., 2024

2023

Priors, population sizes, and power in genome-wide hypothesis tests.

Jitong Cai, Jianan Zhan, Dan E. Arking, Joel S. Bader

BMC Bioinform., December, 2023

2020

Between-tumor and within-tumor heterogeneity in invasive potential.

Veena Padmanaban, Yohannes Tsehay, Kevin J. Cheung, Andrew J. Ewald, Joel S. Bader

PLoS Comput. Biol., 2020

OrgDyn: feature- and model-based characterization of spatial and temporal organoid dynamics.

Zaki Hasnain, Andrew K. Fraser, Dan Georgess, Alex Choi, Paul Macklin, Joel S. Bader, Shelly R. Peyton, Andrew J. Ewald, Paul K. Newton

Bioinform., 2020

2016

BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts.

Kun Yang, Giovanni Stracquadanio, Jingchuan Luo, Jef D. Boeke, Joel S. Bader

Bioinform., 2016

BioPartsDB: a synthetic biology workflow web-application for education and research.

Giovanni Stracquadanio, Kun Yang, Jef D. Boeke, Joel S. Bader

Bioinform., 2016

2013

Session Introduction.

Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Trey Ideker, Joel S. Bader

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012

How networks change with time.

Yongjin Park, Joel S. Bader

Bioinform., 2012

Query-based Biclustering using Formal Concept Analysis.

Faris Alqadah, Joel S. Bader, Rajul Anand, Chandan K. Reddy

Proceedings of the Twelfth SIAM International Conference on Data Mining, 2012

Session Introduction.

Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Joel S. Bader

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

Resolving the structure of interactomes with hierarchical agglomerative clustering.

Yongjin Park, Joel S. Bader

BMC Bioinform., 2011

2010

Predicting functional associations from metabolism using bi-partite network algorithms.

Balaji Veeramani, Joel S. Bader

BMC Syst. Biol., 2010

NeMo: Network Module identification in Cytoscape.

Corban G. Rivera, Rachit Vakil, Joel S. Bader

BMC Bioinform., 2010

2009

Metabolic Flux Correlations, Genetic Interactions, and Disease.

Balaji Veeramani, Joel S. Bader

J. Comput. Biol., 2009

Analytical approximations for the amplitude and period of a relaxation oscillator.

Carmen Kut, Vahid Golkhou, Joel S. Bader

BMC Syst. Biol., 2009

Precision and recall estimates for two-hybrid screens.

Hailiang Huang, Joel S. Bader

Bioinform., 2009

Automated Design of Assemblable, Modular, Synthetic Chromosomes.

Sarah M. Richardson, Brian S. Olson, Jessica S. Dymond, Randal C. Burns, Srinivasan Chandrasegaran, Jef D. Boeke, Amarda Shehu, Joel S. Bader

Proceedings of the Parallel Processing and Applied Mathematics, 2009

2007

Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps.

Hailiang Huang, Bruno Jedynak, Joel S. Bader

PLoS Comput. Biol., 2007

Ab initio Prediction of Transcription Factor Binding Sites.

L. Angela Liu, Joel S. Bader

Proceedings of the Biocomputing 2007, 2007

2006

Probabilistic Paths for Protein Complex Inference.

Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader

Proceedings of the Systems Biology and Computational Proteomics, 2006

2005

Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast.

Ping Ye, Brian D. Peyser, Forrest A. Spencer, Joel S. Bader

BMC Bioinform., 2005

Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthetic lethality.

Yan Qi, Ping Ye, Joel S. Bader

BMC Bioinform., 2005

2004

Probabilistic inference of molecular networks from noisy data sources.

Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky

Bioinform., 2004

2003

Greedily building protein networks with confidence.

Joel S. Bader

Bioinform., 2003