Frederick P. Roth

According to our database, Frederick P. Roth authored at least 26 papers between 2003 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

MaveRegistry: a collaboration platform for multiplexed assays of variant effect.

Da Kuang, Jochen Weile, Nishka Kishore, Maria Nguyen, Alan F. Rubin, Stanley Fields, Douglas M. Fowler, Frederick P. Roth

Bioinform., 2021

Prioritizing genes for systematic variant effect mapping.

Da Kuang, Rebecca Truty, Jochen Weile, Britt Johnson, Keith Nykamp, Carlos Araya, Robert L. Nussbaum, Frederick P. Roth

Bioinform., 2021

2020

A reference map of the human binary protein interactome.

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoît Charloteaux, Dong-Sic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon-gang Choi, Claudia Colabella, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nat., 2020

MaveQuest: a web resource for planning experimental tests of human variant effects.

Da Kuang, Jochen Weile, Roujia Li, Tom W. Ouellette, Jarry A. Barber, Frederick P. Roth

Bioinform., 2020

2019

A web application and service for imputing and visualizing missense variant effect maps.

Yingzhou Wu, Jochen Weile, Atina G. Coté, Song Sun, Jennifer J. Knapp, Marta Verby, Frederick P. Roth

Bioinform., 2019

2017

Systematic identification of phosphorylation-mediated protein interaction switches.

Matthew J. Betts, Oliver Wichmann, Mathias Utz, Timon Andre, Evangelia Petsalaki, Pablo Minguez, Luca Parca, Frederick P. Roth, Anne-Claude Gavin, Peer Bork, Robert B. Russell

PLoS Comput. Biol., 2017

2015

Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations.

Fan Yang, Evangelia Petsalaki, Thomas Rolland, David E. Hill, Marc Vidal, Frederick P. Roth

PLoS Comput. Biol., 2015

SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets.

Evangelia Petsalaki, Andreas O. Helbig, Anjali Gopal, Adrian Pasculescu, Frederick P. Roth, Tony Pawson

Nucleic Acids Res., 2015

2014

Target-Independent Prediction of Drug Synergies Using Only Drug Lipophilicity.

Kaan Yilancioglu, Zohar B. Weinstein, Cem Meydan, Azat Akhmetov, Isil Toprak, Arda Durmaz, Ivan Iossifov, Hilal Kazan, Frederick P. Roth, Murat Cokol

J. Chem. Inf. Model., 2014

2013

ChromoZoom: a flexible, fluid, web-based genome browser.

Theodore R. Pak, Frederick P. Roth

Bioinform., 2013

2012

Viral Perturbations of Host Networks Reflect Disease Etiology.

Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica Cara Mar, Michael A. Calderwood, Amy Baldwin, Bo Zhao, Balaji Santhanam, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth, Jennifer Roecklein-Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush, David E. Hill, Karl Münger, Marc Vidal, Albert-László Barabási

PLoS Comput. Biol., 2012

Session introduction.

Oliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2010

Interpreting Metabolomic Profiles using Unbiased Pathway Models.

Rahul C. Deo, Luke Hunter, Gregory D. Lewis, Guillaume Pare, Ramachandran S. Vasan, Daniel Chasman, Thomas J. Wang, Robert E. Gerszten, Frederick P. Roth

PLoS Comput. Biol., 2010

FuncBase : a resource for quantitative gene function annotation.

John E. Beaver, Murat Tasan, Francis D. Gibbons, Weidong Tian, Timothy R. Hughes, Frederick P. Roth

Bioinform., 2010

2009

Biomolecular Network Structure and Function.

Lan V. Zhang, Frederick P. Roth

Proceedings of the Encyclopedia of Complexity and Systems Science, 2009

Next generation software for functional trend analysis.

Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan, Frederick P. Roth

Bioinform., 2009

2008

Chemical substructures that enrich for biological activity.

Justin Klekota, Frederick P. Roth

Bioinform., 2008

The Synergizer service for translating gene, protein and other biological identifiers.

Gabriel F. Berriz, Frederick P. Roth

Bioinform., 2008

2006

Using High-Throughput Screening Data To Discriminate Compounds with Single-Target Effects from Those with Side Effects.

Justin Klekota, Erik Brauner, Frederick P. Roth, Stuart L. Schreiber

J. Chem. Inf. Model., 2006

Query Chem: a Google-powered web search combining text and chemical structures.

Justin Klekota, Frederick P. Roth, Stuart L. Schreiber

Bioinform., 2006

Probabilistic Paths for Protein Complex Inference.

Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader

Proceedings of the Systems Biology and Computational Proteomics, 2006

2004

Predicting co-complexed protein pairs using genomic and proteomic data integration.

Lan V. Zhang, Sharyl L. Wong, Oliver D. King, Frederick P. Roth

BMC Bioinform., 2004

Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.

Yonatan H. Grad, Frederick P. Roth, Marc S. Halfon, George M. Church

Bioinform., 2004

2003

GoFish finds genes with combinations of Gene Ontology attributes.

Gabriel F. Berriz, James V. White, Oliver D. King, Frederick P. Roth

Bioinform., 2003

Characterizing gene sets with FuncAssociate.

Gabriel F. Berriz, Oliver D. King, Barbara Bryant, Chris Sander, Frederick P. Roth

Bioinform., 2003

Predicting phenotype from patterns of annotation.

Oliver D. King, Jeffrey C. Lee, Aimée M. Dudley, Daniel M. Janse, George M. Church, Frederick P. Roth

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003