José Carbonell

According to our database, José Carbonell authored at least 16 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

Lessons Learned from a Performance Analysis and Optimization of a Multiscale Cellular Simulation.

Marc Clascà, Marta Garcia-Gasulla, Arnau Montagud, José Carbonell-Caballero, Alfonso Valencia

Proceedings of the Platform for Advanced Scientific Computing Conference, 2023

2019

A comparison of mechanistic signaling pathway activity analysis methods.

Alicia Amadoz, Marta R. Hidalgo, Cankut Çubuk, José Carbonell-Caballero, Joaquín Dopazo

Briefings Bioinform., 2019

2017

Reference genome assessment from a population scale perspective: an accurate profile of variability and noise.

José Carbonell-Caballero, Alicia Amadoz, Roberto Alonso, Marta R. Hidalgo, Cankut Çubuk, David V. Conesa, Antonio López-Quílez, Joaquín Dopazo

Bioinform., 2017

2016

Actionable pathways: interactive discovery of therapeutic targets using signaling pathway models.

Francisco Salavert, Marta R. Hidalgo, Alicia Amadoz, Cankut Çubuk, Ignacio Medina, Daniel Crespo, José Carbonell-Caballero, Joaquín Dopazo

Nucleic Acids Res., 2016

2015

Babelomics 5.0: functional interpretation for new generations of genomic data.

Roberto Alonso, Francisco Salavert, Francisco García-García, José Carbonell-Caballero, Marta Bleda, Luz Garcia-Alonso, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez, Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-Ballesteros, Alejandro Alemán, Joaquín Tárraga, David Montaner, Ignacio Medina, Joaquín Dopazo

Nucleic Acids Res., 2015

2013

Inferring the functional effect of gene expression changes in signaling pathways.

Patricia Sebastián-León, José Carbonell, Francisco Salavert, Rubén Sánchez, Ignacio Medina, Joaquín Dopazo

Nucleic Acids Res., 2013

2012

Qualimap: evaluating next-generation sequencing alignment data.

Fernando García-Alcalde, Konstantin Okonechnikov, José Carbonell, Luis M. Cruz, Stefan Götz, Sonia Tarazona, Joaquín Dopazo, Thomas F. Meyer, Ana Conesa

Bioinform., 2012

2011

Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.

Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo

Nucleic Acids Res., 2011

2010

Serial Expression Analysis: a web tool for the analysis of serial gene expression data.

María José Nueda, José Carbonell, Ignacio Medina, Joaquín Dopazo, Ana Conesa

Nucleic Acids Res., 2010

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2010

2009

Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.

Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2009

2008

GEPAS, a web-based tool for microarray data analysis and interpretation.

Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.

Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo

Nucleic Acids Res., 2008

MRI denoising using Non-Local Means.

José V. Manjón, José Carbonell-Caballero, Juan José Lull, Gracián García-Martí, Luis Martí-Bonmatí, Montserrat Robles

Medical Image Anal., 2008

2007

A nonparametric MRI inhomogeneity correction method.

José V. Manjón, Juan José Lull, José Carbonell-Caballero, Gracián García-Martí, Luis Martí-Bonmatí, Montserrat Robles

Medical Image Anal., 2007

2006

Using the Grid to Analyze the Pharmacokinetic Modelling after Contrast Administration in Dynamic MRI.

Ignacio Blanquer, Vicente Hernández, Daniel Monleón, José Carbonell, David Moratal, Bernardo Celda, Montserrat Robles, Luis Martí-Bonmatí

Proceedings of the Challenges and Opportunities of HealthGrids, 2006