Alberto D. Pascual-Montano

According to our database1, Alberto D. Pascual-Montano authored at least 39 papers between 2001 and 2015.

Collaborative distances:



In proceedings 
PhD thesis 




NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioning.
Nucleic Acids Res., 2015

NMF-mGPU: non-negative matrix factorization on multi-GPU systems.
BMC Bioinform., 2015

CentrosomeDB: a new generation of the centrosomal proteins database for <i>Human</i> and <i>Drosophila melanogaster</i>.
Nucleic Acids Res., 2014

A survey of dimensionality reduction techniques.
CoRR, 2014

3DEM Loupe: analysis of macromolecular dynamics using structures from electron microscopy.
Nucleic Acids Res., 2013

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics.
Nucleic Acids Res., 2012

Gene expression modular analysis: an overview from the data mining perspective.
WIREs Data Mining Knowl. Discov., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinform., 2011

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.
J. Biomed. Semant., 2011

Parallelism on the Nonnegative Matrix Factorization.
Proceedings of the Applications, Tools and Techniques on the Road to Exascale Computing, Proceedings of the conference ParCo 2011, 31 August, 2011

Biclustering and classification analysis in gene expression using Nonnegative Matrix Factorization on multi-GPU systems.
Proceedings of the 11th International Conference on Intelligent Systems Design and Applications, 2011

Finding closed frequent item sets by intersecting transactions.
Proceedings of the EDBT 2011, 2011

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.
Nucleic Acids Res., 2010

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.
Nucleic Acids Res., 2010

Moara: a Java library for extracting and normalizing gene and protein mentions.
BMC Bioinform., 2010

SENT: semantic features in text.
Nucleic Acids Res., 2009

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.
Nucleic Acids Res., 2009

CentrosomeDB: a human centrosomal proteins database.
Nucleic Acids Res., 2009

Extraction of biomedical events using case-based reasoning.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

bioNMF: a web-based tool for nonnegative matrix factorization in biology.
Nucleic Acids Res., 2008

Assessment of protein set coherence using functional annotations.
BMC Bioinform., 2008

ChIPCodis: mining complex regulatory systems in yeast by concurrent enrichment analysis of chip-on-chip data.
Bioinform., 2008

Named Entity Recognition and Normalization: A Domain-Specific Language Approach.
Proceedings of the 2nd International Workshop on Practical Applications of Computational Biology and Bioinformatics, 2008

Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library.
Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008

Non-negative matrix factorization in bioinformatics: Towards understanding biological processes.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2008), 2008

CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem.
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

Nonsmooth Nonnegative Matrix Factorization (nsNMF).
IEEE Trans. Pattern Anal. Mach. Intell., 2006

bioNMF: a versatile tool for non-negative matrix factorization in biology.
BMC Bioinform., 2006

Discovering semantic features in the literature: a foundation for building functional associations.
BMC Bioinform., 2006

A literature-based similarity metric for biological processes.
BMC Bioinform., 2006

Biclustering of gene expression data by non-smooth non-negative matrix factorization.
BMC Bioinform., 2006

Integrated analysis of gene expression by association rules discovery.
BMC Bioinform., 2006

Optimization problems in electron microscopy of single particles.
Ann. Oper. Res., 2006

A Speculative Parallel Algorithm for Self-Organizing Maps.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

Two-way clustering of gene expression profiles by sparse matrix factorization.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

Engene: the processing and exploratory analysis of gene expression data.
Bioinform., 2003

Modeling Shape and Topology of 3D Images of Biological Specimens.
Proceedings of the 16th International Conference on Pattern Recognition, 2002

Spin Images and Neural Networks for Efficient Content-Based Retrieval in 3D Object Databases.
Proceedings of the Image and Video Retrieval, International Conference, 2002

Smoothly distributed fuzzy c-means: a new self-organizing map.
Pattern Recognit., 2001