José Juan Tapia

According to our database1, José Juan Tapia authored at least 14 papers between 2008 and 2020.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

On csauthors.net:

Bibliography

2020
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
J. Integr. Bioinform., 2020

2017
Automated visualization of rule-based models.
PLoS Comput. Biol., 2017

2016
Unbiased Rare Event Sampling in Spatial Stochastic Systems Biology Models Using a Weighted Ensemble of Trajectories.
PLoS Comput. Biol., 2016

BioNetGen 2.2: advances in rule-based modeling.
Bioinform., 2016

2015
Design Automation for Biological Models: A Pipeline that Incorporates Spatial and Molecular Complexity.
Proceedings of the 25th edition on Great Lakes Symposium on VLSI, GLVLSI 2015, Pittsburgh, PA, USA, May 20, 2015

2014
MOSBIE: a tool for comparison and analysis of rule-based biochemical models.
BMC Bioinform., 2014

2013
The Atomizer: Extracting Implicit Molecular Structure from Reaction Network Models.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Graphics processing unit based direct simulation Monte Carlo.
Simul., 2012

Adaptive coarse-graining for transient and quasi-equilibrium analyses of stochastic gene regulation.
Proceedings of the 51th IEEE Conference on Decision and Control, 2012

2011
Parallelizing the Cellular Potts Model on graphics processing units.
Comput. Phys. Commun., 2011

2009
A Clustering Genetic Algorithm for Genomic Data Mining.
Proceedings of the Foundations of Computational Intelligence, 2009

Data-Parallel Algorithms for Large-Scale Real-Time Simulation of the Cellular Potts Model on Graphics Processing Units.
Proceedings of the IEEE International Conference on Systems, 2009

MOCEA: a multi-objective clustering evolutionary algorithm for inferring protein-protein functional interactions.
Proceedings of the Genetic and Evolutionary Computation Conference, 2009

2008
A clustering genetic algorithm for inferring protein-protein functional interactions from phylogenetic profiles.
Proceedings of the IEEE Congress on Evolutionary Computation, 2008


  Loading...