Michael L. Blinov

According to our database1, Michael L. Blinov authored at least 19 papers between 2004 and 2022.

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Bibliography

2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.
CoRR, 2022

2021
RunBioSimulations: an extensible web application that simulates a wide range of computational modeling frameworks, algorithms, and formats.
Nucleic Acids Res., 2021

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
Briefings Bioinform., 2021

2020
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
J. Integr. Bioinform., 2020

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
J. Integr. Bioinform., 2020

Systems biology graphical notation markup language (SBGNML) version 0.3.
J. Integr. Bioinform., 2020

2019
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.
J. Integr. Bioinform., 2019

2016
Rule-based modeling with Virtual Cell.
Bioinform., 2016

2014
Pathway Commons at Virtual Cell: use of pathway data for mathematical modeling.
Bioinform., 2014

2011
Using views of Systems Biology Cloud: application for model building.
Theory Biosci., 2011

2010
Modeling without Borders: Creating and Annotating VCell Models Using the Web.
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

2009
PMAP: databases for analyzing proteolytic events and pathways.
Nucleic Acids Res., 2009

2007
Kinetic Modeling Using BioPAX Ontology.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2007

XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular Complexes.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Graph Theory for Rule-Based Modeling of Biochemical Networks.
Trans. Comp. Sys. Biology, 2006

2005
Rule-based modeling of biochemical networks.
Complex., 2005

Graphical rule-based representation of signal-transduction networks.
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005

2004
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains.
Bioinform., 2004


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